Literature DB >> 17097351

An analysis of the Petri net based model of the human body iron homeostasis process.

Andrea Sackmann1, Dorota Formanowicz, Piotr Formanowicz, Ina Koch, Jacek Blazewicz.   

Abstract

In the paper a Petri net based model of the human body iron homeostasis is presented and analyzed. The body iron homeostasis is an important but not fully understood complex process. The modeling of the process presented in the paper is expressed in the language of Petri net theory. An application of this theory to the description of biological processes allows for very precise analysis of the resulting models. Here, such an analysis of the body iron homeostasis model from a mathematical point of view is given.

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Year:  2006        PMID: 17097351     DOI: 10.1016/j.compbiolchem.2006.09.005

Source DB:  PubMed          Journal:  Comput Biol Chem        ISSN: 1476-9271            Impact factor:   2.877


  14 in total

1.  Some aspects of the anemia of chronic disorders modeled and analyzed by petri net based approach.

Authors:  Dorota Formanowicz; Andrea Sackmann; Adam Kozak; Jacek Błażewicz; Piotr Formanowicz
Journal:  Bioprocess Biosyst Eng       Date:  2011-01-08       Impact factor: 3.210

Review 2.  A systems biology approach to iron metabolism.

Authors:  Julia Chifman; Reinhard Laubenbacher; Suzy V Torti
Journal:  Adv Exp Med Biol       Date:  2014       Impact factor: 2.622

3.  A Stochastic Petri Net-Based Model of the Involvement of Interleukin 18 in Atherosclerosis.

Authors:  Dorota Formanowicz; Agnieszka Rybarczyk; Marcin Radom; Krzysztof Tanaś; Piotr Formanowicz
Journal:  Int J Mol Sci       Date:  2020-11-13       Impact factor: 5.923

4.  Minimally perturbing a gene regulatory network to avoid a disease phenotype: the glioma network as a test case.

Authors:  Guy Karlebach; Ron Shamir
Journal:  BMC Syst Biol       Date:  2010-02-25

5.  Bioinformatics and computational biology in Poland.

Authors:  Janusz M Bujnicki; Jerzy Tiuryn
Journal:  PLoS Comput Biol       Date:  2013-05-02       Impact factor: 4.475

6.  Transferrin changes in haemodialysed patients.

Authors:  Dorota Formanowicz; Piotr Formanowicz
Journal:  Int Urol Nephrol       Date:  2011-04-01       Impact factor: 2.370

7.  A Boolean probabilistic model of metabolic adaptation to oxygen in relation to iron homeostasis and oxidative stress.

Authors:  Fiona Achcar; Jean-Michel Camadro; Denis Mestivier
Journal:  BMC Syst Biol       Date:  2011-04-13

8.  On functional module detection in metabolic networks.

Authors:  Ina Koch; Jörg Ackermann
Journal:  Metabolites       Date:  2013-08-12

9.  Manatee invariants reveal functional pathways in signaling networks.

Authors:  Leonie Amstein; Jörg Ackermann; Jennifer Scheidel; Simone Fulda; Ivan Dikic; Ina Koch
Journal:  BMC Syst Biol       Date:  2017-07-28

10.  Genome scale modeling in systems biology: algorithms and resources.

Authors:  Ali Najafi; Gholamreza Bidkhori; Joseph H Bozorgmehr; Ina Koch; Ali Masoudi-Nejad
Journal:  Curr Genomics       Date:  2014-04       Impact factor: 2.236

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