Literature DB >> 33202974

A Stochastic Petri Net-Based Model of the Involvement of Interleukin 18 in Atherosclerosis.

Dorota Formanowicz1, Agnieszka Rybarczyk2,3,4, Marcin Radom2,3, Krzysztof Tanaś2, Piotr Formanowicz2,3.   

Abstract

Interleukin 18 (IL-18) is a proinflammatory and proatherogenic cytokine with pleiotropic properties, which is involved in T and NK cell maturation and the synthesis of other inflammatory cytokines and cell adhesion molecules. It plays a significant role in orchestrating the cytokine cascade, accelerates atherosclerosis and influences plaque vulnerability. To investigate the influence of IL-18 cytokine on atherosclerosis development, a stochastic Petri net model was built and then analyzed. First, MCT-sets and t-clusters were generated, then knockout and simulation-based analysis was conducted. The application of systems approach that was used in this research enabled an in-depth analysis of the studied phenomenon. Our results gave us better insight into the studied phenomenon and allow revealing that activation of macrophages by the classical pathway and IL-18-MyD88 signaling axis is crucial for the modeled process.

Entities:  

Keywords:  Petri net; atherosclerosis; inflammation; mathematical modeling; stochastic Petri net; t-invariants

Mesh:

Substances:

Year:  2020        PMID: 33202974      PMCID: PMC7696504          DOI: 10.3390/ijms21228574

Source DB:  PubMed          Journal:  Int J Mol Sci        ISSN: 1422-0067            Impact factor:   5.923


  35 in total

Review 1.  Cell apoptosis and hemodialysis-induced inflammation.

Authors:  Julia Carracedo; Rafael Ramírez; Juan A Madueño; Sagrario Soriano; Alberto Rodríguez-Benot; Mariano Rodríguez; Alejandro Martín-Malo; Pedro Aljama
Journal:  Kidney Int Suppl       Date:  2002-05       Impact factor: 10.545

2.  The role of Fenton reaction in ROS-induced toxicity underlying atherosclerosis - modeled and analyzed using a Petri net-based approach.

Authors:  Dorota Formanowicz; Marcin Radom; Agnieszka Rybarczyk; Piotr Formanowicz
Journal:  Biosystems       Date:  2018-01-06       Impact factor: 1.973

3.  IFN-gamma-induced TNF-alpha expression is regulated by interferon regulatory factors 1 and 8 in mouse macrophages.

Authors:  Virginia Vila-del Sol; Carmen Punzón; Manuel Fresno
Journal:  J Immunol       Date:  2008-10-01       Impact factor: 5.422

4.  MonaLisa--visualization and analysis of functional modules in biochemical networks.

Authors:  Jens Einloft; Jörg Ackermann; Joachim Nöthen; Ina Koch
Journal:  Bioinformatics       Date:  2013-04-05       Impact factor: 6.937

Review 5.  The Role of Cytokines in the Development of Atherosclerosis.

Authors:  A R Fatkhullina; I O Peshkova; E K Koltsova
Journal:  Biochemistry (Mosc)       Date:  2016-11       Impact factor: 2.487

6.  Lipopolysaccharide binding protein is an essential component of the innate immune response to Escherichia coli peritonitis in mice.

Authors:  Sylvia Knapp; Alex F de Vos; Sandrine Florquin; Douglas T Golenbock; Tom van der Poll
Journal:  Infect Immun       Date:  2003-12       Impact factor: 3.441

7.  Quasi-Steady-State Analysis based on Structural Modules and Timed Petri Net Predict System's Dynamics: The Life Cycle of the Insulin Receptor.

Authors:  Jennifer Scheidel; Klaus Lindauer; Jörg Ackermann; Ina Koch
Journal:  Metabolites       Date:  2015-12-17

Review 8.  Interleukin-18 in Health and Disease.

Authors:  Koubun Yasuda; Kenji Nakanishi; Hiroko Tsutsui
Journal:  Int J Mol Sci       Date:  2019-02-02       Impact factor: 5.923

9.  Usefulness of serum interleukin-18 in predicting cardiovascular mortality in patients with chronic kidney disease--systems and clinical approach.

Authors:  Dorota Formanowicz; Maria Wanic-Kossowska; Elżbieta Pawliczak; Marcin Radom; Piotr Formanowicz
Journal:  Sci Rep       Date:  2015-12-16       Impact factor: 4.379

10.  A Role of Inflammation and Immunity in Essential Hypertension-Modeled and Analyzed Using Petri Nets.

Authors:  Dorota Formanowicz; Agnieszka Rybarczyk; Marcin Radom; Piotr Formanowicz
Journal:  Int J Mol Sci       Date:  2020-05-09       Impact factor: 5.923

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  1 in total

1.  The Mutual Contribution of 3-NT, IL-18, Albumin, and Phosphate Foreshadows Death of Hemodialyzed Patients in a 2-Year Follow-Up.

Authors:  Łukasz Kasprzak; Mateusz Twardawa; Piotr Formanowicz; Dorota Formanowicz
Journal:  Antioxidants (Basel)       Date:  2022-02-11
  1 in total

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