Literature DB >> 21221653

Some aspects of the anemia of chronic disorders modeled and analyzed by petri net based approach.

Dorota Formanowicz1, Andrea Sackmann, Adam Kozak, Jacek Błażewicz, Piotr Formanowicz.   

Abstract

Anemia of chronic disorders is a very important phenomenon and iron is a crucial factor of this complex process. To better understand this process and its influence on some other factors we have built a mathematical model of the human body iron homeostasis, which possibly most exactly would reflect the metabolism of iron in the case of anemia and inflammation. The model has been formulated in the language of Petri net theory, which allows for its simulation and precise analysis. The obtained results of the analysis of the model's behavior, concerning the influence of anemia and inflammation on the transferrin receptors, and hepcidin concentration changes are the valuable complements to the knowledge following from clinical research. This analysis is one of the first attempts to investigate properties and behavior of a not fully understood biological system on a basis of its Petri net based model.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21221653      PMCID: PMC3092940          DOI: 10.1007/s00449-010-0507-6

Source DB:  PubMed          Journal:  Bioprocess Biosyst Eng        ISSN: 1615-7591            Impact factor:   3.210


  30 in total

1.  Markers of masked iron deficiency and effectiveness of EPO therapy in chronic renal failure.

Authors:  N Ahluwalia; B S Skikne; V Savin; A Chonko
Journal:  Am J Kidney Dis       Date:  1997-10       Impact factor: 8.860

2.  Using Petri Net tools to study properties and dynamics of biological systems.

Authors:  Mor Peleg; Daniel Rubin; Russ B Altman
Journal:  J Am Med Inform Assoc       Date:  2004-11-23       Impact factor: 4.497

3.  Modeling and simulation of molecular biology systems using petri nets: modeling goals of various approaches.

Authors:  Simon Hardy; Pierre N Robillard
Journal:  J Bioinform Comput Biol       Date:  2004-12       Impact factor: 1.122

4.  Constructing biological pathway models with hybrid functional Petri nets.

Authors:  Atsushi Doi; Sachie Fujita; Hiroshi Matsuno; Masao Nagasaki; Satoru Miyano
Journal:  In Silico Biol       Date:  2004

5.  An analysis of the Petri net based model of the human body iron homeostasis process.

Authors:  Andrea Sackmann; Dorota Formanowicz; Piotr Formanowicz; Ina Koch; Jacek Blazewicz
Journal:  Comput Biol Chem       Date:  2006-11-09       Impact factor: 2.877

Review 6.  Iron and infection: new developments and their implications.

Authors:  C G Ward; J J Bullen; H J Rogers
Journal:  J Trauma       Date:  1996-08

Review 7.  Hyporesponsiveness to erythropoietic therapy due to chronic inflammation.

Authors:  I C Macdougall; A C Cooper
Journal:  Eur J Clin Invest       Date:  2005-12       Impact factor: 4.686

8.  Erythropoietin modulates intracellular calcium in a human neuroblastoma cell line.

Authors:  R Assandri; M Egger; M Gassmann; E Niggli; C Bauer; I Forster; A Gorlach
Journal:  J Physiol       Date:  1999-04-15       Impact factor: 5.182

9.  Hepcidin regulates cellular iron efflux by binding to ferroportin and inducing its internalization.

Authors:  Elizabeta Nemeth; Marie S Tuttle; Julie Powelson; Michael B Vaughn; Adriana Donovan; Diane McVey Ward; Tomas Ganz; Jerry Kaplan
Journal:  Science       Date:  2004-10-28       Impact factor: 47.728

10.  Application of Petri net based analysis techniques to signal transduction pathways.

Authors:  Andrea Sackmann; Monika Heiner; Ina Koch
Journal:  BMC Bioinformatics       Date:  2006-11-02       Impact factor: 3.169

View more
  7 in total

Review 1.  A systems biology approach to iron metabolism.

Authors:  Julia Chifman; Reinhard Laubenbacher; Suzy V Torti
Journal:  Adv Exp Med Biol       Date:  2014       Impact factor: 2.622

2.  Transferrin changes in haemodialysed patients.

Authors:  Dorota Formanowicz; Piotr Formanowicz
Journal:  Int Urol Nephrol       Date:  2011-04-01       Impact factor: 2.370

3.  Petri net-based approach to modeling and analysis of selected aspects of the molecular regulation of angiogenesis.

Authors:  Dorota Formanowicz; Marcin Radom; Piotr Zawierucha; Piotr Formanowicz
Journal:  PLoS One       Date:  2017-03-02       Impact factor: 3.240

4.  Activated Oncogenic Pathway Modifies Iron Network in Breast Epithelial Cells: A Dynamic Modeling Perspective.

Authors:  Julia Chifman; Seda Arat; Zhiyong Deng; Erica Lemler; James C Pino; Leonard A Harris; Michael A Kochen; Carlos F Lopez; Steven A Akman; Frank M Torti; Suzy V Torti; Reinhard Laubenbacher
Journal:  PLoS Comput Biol       Date:  2017-02-06       Impact factor: 4.475

5.  Interrelations between Iron and Vitamin A-Studied Using Systems Approach.

Authors:  Kaja Gutowska; Dorota Formanowicz; Piotr Formanowicz
Journal:  Int J Mol Sci       Date:  2022-01-21       Impact factor: 5.923

6.  Chronic Kidney Disease as a Cardiovascular Disorder-Tonometry Data Analyses.

Authors:  Mateusz Twardawa; Piotr Formanowicz; Dorota Formanowicz
Journal:  Int J Environ Res Public Health       Date:  2022-09-28       Impact factor: 4.614

7.  Usefulness of serum interleukin-18 in predicting cardiovascular mortality in patients with chronic kidney disease--systems and clinical approach.

Authors:  Dorota Formanowicz; Maria Wanic-Kossowska; Elżbieta Pawliczak; Marcin Radom; Piotr Formanowicz
Journal:  Sci Rep       Date:  2015-12-16       Impact factor: 4.379

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.