Literature DB >> 17093971

Low volume amplification and sequencing of mitochondrial DNA on a chemically structured chip.

Sabine Lutz-Bonengel1, Timo Sänger, Marielle Heinrich, Ulrike Schön, Ulrike Schmidt.   

Abstract

Low volume (LV) amplification (1 microL) of nuclear DNA (nucDNA) on a chemically structured chip is an appropriate and highly sensitive method to simultaneously amplify amelogenin and 15 forensically relevant short tandem repeats (STR). In this study, a combined method using on-chip LV amplification of mitochondrial DNA (mtDNA) and subsequent on-chip LV cycle sequencing was established to obtain a method, which is sensitive and robust enough to allow reliable analysis of DNA amounts representing the single cell level. All the necessary steps of the procedure--except for the purification of the sequencing products--were accomplished within the same final 2-microL reaction volume.

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Substances:

Year:  2006        PMID: 17093971     DOI: 10.1007/s00414-006-0125-7

Source DB:  PubMed          Journal:  Int J Legal Med        ISSN: 0937-9827            Impact factor:   2.686


  28 in total

1.  Reduced volume PCR amplification reactions using the AmpFlSTR Profiler Plus kit.

Authors:  Michelle L Gaines; Patrick W Wojtkiewicz; Jennifer A Valentine; Connie L Brown
Journal:  J Forensic Sci       Date:  2002-11       Impact factor: 1.832

Review 2.  Forensics and mitochondrial DNA: applications, debates, and foundations.

Authors:  Bruce Budowle; Marc W Allard; Mark R Wilson; Ranajit Chakraborty
Journal:  Annu Rev Genomics Hum Genet       Date:  2003       Impact factor: 8.929

3.  Real-time DNA quantification of nuclear and mitochondrial DNA in forensic analysis.

Authors:  Hanna Andréasson; Ulf Gyllensten; Marie Allen
Journal:  Biotechniques       Date:  2002-08       Impact factor: 1.993

4.  Rapid screening of mtDNA coding region SNPs for the identification of west European Caucasian haplogroups.

Authors:  Anita Brandstätter; Thomas J Parsons; Walther Parson
Journal:  Int J Legal Med       Date:  2003-08-21       Impact factor: 2.686

Review 5.  SNP typing in forensic genetics: a review.

Authors:  Beatriz Sobrino; Angel Carracedo
Journal:  Methods Mol Biol       Date:  2005

6.  Subtyping mtDNA haplogroup H by SNaPshot minisequencing and its application in forensic individual identification.

Authors:  P Grignani; G Peloso; A Achilli; C Turchi; A Tagliabracci; M Alù; G Beduschi; U Ricci; L Giunti; C Robino; S Gino; C Previderè
Journal:  Int J Legal Med       Date:  2005-12-07       Impact factor: 2.686

7.  MiniX-STR multiplex system population study in Japan and application to degraded DNA analysis.

Authors:  H Asamura; H Sakai; K Kobayashi; M Ota; H Fukushima
Journal:  Int J Legal Med       Date:  2006-02-11       Impact factor: 2.686

8.  Sequence and organization of the human mitochondrial genome.

Authors:  S Anderson; A T Bankier; B G Barrell; M H de Bruijn; A R Coulson; J Drouin; I C Eperon; D P Nierlich; B A Roe; F Sanger; P H Schreier; A J Smith; R Staden; I G Young
Journal:  Nature       Date:  1981-04-09       Impact factor: 49.962

9.  Y-STR typing of an Austrian population sample using a 17-loci multiplex PCR assay.

Authors:  Burkhard Berger; Alexandra Lindinger; Harald Niederstätter; Petra Grubwieser; Walther Parson
Journal:  Int J Legal Med       Date:  2005-04-21       Impact factor: 2.686

10.  A duplex real-time qPCR assay for the quantification of human nuclear and mitochondrial DNA in forensic samples: implications for quantifying DNA in degraded samples.

Authors:  Mark D Timken; Katie L Swango; Cristián Orrego; Martin R Buoncristiani
Journal:  J Forensic Sci       Date:  2005-09       Impact factor: 1.832

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  4 in total

1.  Reduced-volume and low-volume typing of Y-chromosomal SNPs to obtain Finnish Y-chromosomal compound haplotypes.

Authors:  Marielle Heinrich; Tina Braun; Timo Sänger; Pekka Saukko; Sabine Lutz-Bonengel; Ulrike Schmidt
Journal:  Int J Legal Med       Date:  2009-08-28       Impact factor: 2.686

2.  Analysis of mitochondrial length heteroplasmy in monozygous and non-monozygous siblings.

Authors:  S Lutz-Bonengel; U Schmidt; T Sänger; M Heinrich; P M Schneider; S Pollak
Journal:  Int J Legal Med       Date:  2008-05-14       Impact factor: 2.686

3.  Single lymphocytes from two healthy individuals with mitochondrial point heteroplasmy are mainly homoplasmic.

Authors:  Sabine Lutz-Bonengel; Timo Sänger; Walther Parson; Helena Müller; Joachim W Ellwart; Marie Follo; Bernhard Bonengel; Harald Niederstätter; Marielle Heinrich; Ulrike Schmidt
Journal:  Int J Legal Med       Date:  2007-10-06       Impact factor: 2.686

4.  DNA profiling of spermatozoa by laser capture microdissection and low volume-PCR.

Authors:  Cai-xia Li; Jun-ping Han; Wen-yan Ren; An-quan Ji; Xiu-lan Xu; Lan Hu
Journal:  PLoS One       Date:  2011-08-11       Impact factor: 3.240

  4 in total

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