Literature DB >> 15843993

Y-STR typing of an Austrian population sample using a 17-loci multiplex PCR assay.

Burkhard Berger1, Alexandra Lindinger, Harald Niederstätter, Petra Grubwieser, Walther Parson.   

Abstract

Y-chromosomal STR haplotypes were determined from a sample of 135 unrelated men and 70 sons from Tirol (Austria) using the AmpFlSTR Yfiler PCR amplification kit (Applied Biosystems) that coamplifies 17 Y-STRs. The panel of markers includes the 9-loci European minimal haplotype (minHt) and, in addition, the markers DYS437, DYS438, DYS439, DYS448, DYS456, DYS458, DYS635 (Y GATA C4) and Y GATA H4. A total of 130 different haplotypes (125 were unique) were identified by the 17 Y-STR markers, an increase of 19 compared with the minHt. The gene diversity of DYS635, DYS456 and DYS458 exceeded 0.75 and only that of the duplicated marker DYS385 (0.86) was higher. Consistently high haplotype diversity values were found in all tested Y-SNP haplogroups. Because the simultaneous analysis of 17 Y-STR systems offers a high power of discrimination at minimum sample consumption, the Yfiler kit is a promising tool for forensic applications.

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Year:  2005        PMID: 15843993     DOI: 10.1007/s00414-005-0546-8

Source DB:  PubMed          Journal:  Int J Legal Med        ISSN: 0937-9827            Impact factor:   2.686


  21 in total

1.  A nomenclature system for the tree of human Y-chromosomal binary haplogroups.

Authors: 
Journal:  Genome Res       Date:  2002-02       Impact factor: 9.043

2.  When autosomal short tandem repeats fail: optimized primer and reaction design for Y-chromosome short tandem repeat analysis in forensic casework.

Authors:  W Parson; H Niederstätter; S Köchl; M Steinlechner; B Berger
Journal:  Croat Med J       Date:  2001-06       Impact factor: 1.351

3.  The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes.

Authors:  Helen Skaletsky; Tomoko Kuroda-Kawaguchi; Patrick J Minx; Holland S Cordum; LaDeana Hillier; Laura G Brown; Sjoerd Repping; Tatyana Pyntikova; Johar Ali; Tamberlyn Bieri; Asif Chinwalla; Andrew Delehaunty; Kim Delehaunty; Hui Du; Ginger Fewell; Lucinda Fulton; Robert Fulton; Tina Graves; Shun-Fang Hou; Philip Latrielle; Shawn Leonard; Elaine Mardis; Rachel Maupin; John McPherson; Tracie Miner; William Nash; Christine Nguyen; Philip Ozersky; Kymberlie Pepin; Susan Rock; Tracy Rohlfing; Kelsi Scott; Brian Schultz; Cindy Strong; Aye Tin-Wollam; Shiaw-Pyng Yang; Robert H Waterston; Richard K Wilson; Steve Rozen; David C Page
Journal:  Nature       Date:  2003-06-19       Impact factor: 49.962

Review 4.  The human Y chromosome: an evolutionary marker comes of age.

Authors:  Mark A Jobling; Chris Tyler-Smith
Journal:  Nat Rev Genet       Date:  2003-08       Impact factor: 53.242

5.  Separate analysis of DYS385a and b versus conventional DYS385 typing: is there forensic relevance?

Authors:  Harald Niederstätter; Burkhard Berger; Herbert Oberacher; Anita Brandstätter; Christian G Huber; Walther Parson
Journal:  Int J Legal Med       Date:  2004-04-08       Impact factor: 2.686

6.  Evaluation of Y-chromosomal STRs: a multicenter study.

Authors:  M Kayser; A Caglià; D Corach; N Fretwell; C Gehrig; G Graziosi; F Heidorn; S Herrmann; B Herzog; M Hidding; K Honda; M Jobling; M Krawczak; K Leim; S Meuser; E Meyer; W Oesterreich; A Pandya; W Parson; G Penacino; A Perez-Lezaun; A Piccinini; M Prinz; C Schmitt; L Roewer
Journal:  Int J Legal Med       Date:  1997       Impact factor: 2.686

7.  High resolution Y chromosome typing: 19 STRs amplified in three multiplex reactions.

Authors:  Elena Bosch; Andrew C Lee; Francesc Calafell; Eduardo Arroyo; Peter Henneman; Peter de Knijff; Mark A Jobling
Journal:  Forensic Sci Int       Date:  2002-01-24       Impact factor: 2.395

8.  Population data of Galicia (NW Spain) on the new Y-STRs DYS437, DYS438, DYS439, GATA A10, GATA A7.1, GATA A7.2, GATA C4 and GATA H4.

Authors:  Beatriz Quintans; Sandra Beleza; Maria Brion; Paula Sanchez-Diz; Maviki Lareu; Angel Carracedo
Journal:  Forensic Sci Int       Date:  2003-01-28       Impact factor: 2.395

9.  Development and validation of a multiplexed Y-chromosome STR genotyping system, Y-PLEX 6, for forensic casework.

Authors:  Sudhir K Sinha; Bruce Budowle; Santosh S Arcot; Stephen L Richey; Ranajit Chakrabor; Mary D Jones; Patrick W Wojtkiewicz; Dolores A Schoenbauer; Ann Marie Gross; Siddhartha K Sinha; Jaiprakash G Shewale
Journal:  J Forensic Sci       Date:  2003-01       Impact factor: 1.832

10.  Spanish population data and forensic usefulness of a novel Y-STR set (DYS437, DYS438, DYS439, DYS460, DYS461, GATA A10, GATA C4, GATA H4).

Authors:  María T Zarrabeitia; José A Riancho; Leonor Gusmão; María V Lareu; Carolina Sañudo; António Amorim; Angel Carracedo
Journal:  Int J Legal Med       Date:  2003-08-02       Impact factor: 2.686

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  21 in total

1.  Genetic polymorphisms of 17 short tandem repeat loci on Y chromosome in central Croatian population.

Authors:  Branka Gršković; Gordan Mršić; Ozren Polašek; Andro Vrdoljak; Siniša Merkaš; Simun Anđelinović
Journal:  Forensic Sci Med Pathol       Date:  2011-01-30       Impact factor: 2.007

2.  Y-STR variation in the Basque diaspora in the Western USA: evolutionary and forensic perspectives.

Authors:  Laura Valverde; Melania Rosique; Stephan Köhnemann; Sergio Cardoso; Ainara García; Adrián Odriozola; Jose María Aznar; David Celorrio; Marianne Schuerenkamp; Josu Zubizarreta; Michael C Davis; Greg Hampikian; Heidi Pfeiffer; Marian M de Pancorbo
Journal:  Int J Legal Med       Date:  2011-11-13       Impact factor: 2.686

3.  Empirical evaluation reveals best fit of a logistic mutation model for human Y-chromosomal microsatellites.

Authors:  Arne Jochens; Amke Caliebe; Uwe Rösler; Michael Krawczak
Journal:  Genetics       Date:  2011-10-03       Impact factor: 4.562

4.  Population genetic analysis of haplotypes based on 17 short tandem repeat loci on Y chromosome in population sample from eastern Croatia.

Authors:  Branka Grsković; Gordan Mrsić; Andro Vrdoljak; Sinisa Merkas; Simun Andelinović
Journal:  Croat Med J       Date:  2010-06       Impact factor: 1.351

5.  Y-chromosomal STR haplotypes in a Northeast Italian population sample using 17plex loci PCR assay.

Authors:  Stefania Turrina; Renzo Atzei; Domenico De Leo
Journal:  Int J Legal Med       Date:  2005-11-19       Impact factor: 2.686

6.  Low volume amplification and sequencing of mitochondrial DNA on a chemically structured chip.

Authors:  Sabine Lutz-Bonengel; Timo Sänger; Marielle Heinrich; Ulrike Schön; Ulrike Schmidt
Journal:  Int J Legal Med       Date:  2006-11-09       Impact factor: 2.686

7.  Y-STR analysis of degraded DNA using reduced-size amplicons.

Authors:  Myung Jin Park; Hwan Young Lee; Ukhee Chung; Seung-Chul Kang; Kyoung-Jin Shin
Journal:  Int J Legal Med       Date:  2006-11-15       Impact factor: 2.686

8.  First successful assay of Y-SNP typing by SNaPshot minisequencing on ancient DNA.

Authors:  C Bouakaze; C Keyser; S Amory; E Crubézy; B Ludes
Journal:  Int J Legal Med       Date:  2007-05-30       Impact factor: 2.686

9.  MiniX-STR multiplex system population study in Japan and application to degraded DNA analysis.

Authors:  H Asamura; H Sakai; K Kobayashi; M Ota; H Fukushima
Journal:  Int J Legal Med       Date:  2006-02-11       Impact factor: 2.686

10.  Moors and Saracens in Europe: estimating the medieval North African male legacy in southern Europe.

Authors:  Cristian Capelli; Valerio Onofri; Francesca Brisighelli; Ilaria Boschi; Francesca Scarnicci; Mara Masullo; Gianmarco Ferri; Sergio Tofanelli; Adriano Tagliabracci; Leonor Gusmao; Antonio Amorim; Francesco Gatto; Mirna Kirin; Davide Merlitti; Maria Brion; Alejandro Blanco Verea; Valentino Romano; Francesco Cali; Vincenzo Pascali
Journal:  Eur J Hum Genet       Date:  2009-01-21       Impact factor: 4.246

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