Literature DB >> 17079496

Rapid molecular strategy for filovirus detection and characterization.

Junhui Zhai1, Gustavo Palacios, Jonathan S Towner, Omar Jabado, Vishal Kapoor, Marietjie Venter, Allen Grolla, Thomas Briese, Janusz Paweska, Robert Swanepoel, Heinz Feldmann, Stuart T Nichol, W Ian Lipkin.   

Abstract

Filoviruses have the capacity to cause lethal outbreaks of hemorrhagic fever in primates. Here we present a simple consensus reverse transcription-PCR method for filovirus recognition and characterization and demonstrate its utility with all known filovirus strains. Phylogenetic assignment is achieved by automated web-based sequence analysis of amplification products.

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Year:  2006        PMID： 17079496      PMCID： PMC1828965          DOI： 10.1128/JCM.01893-06

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  13 in total

1.  MEGA2: molecular evolutionary genetics analysis software.

Authors:  S Kumar; K Tamura; I B Jakobsen; M Nei
Journal:  Bioinformatics       Date:  2001-12       Impact factor: 6.937

2.  Molecular identification of mumps virus genotypes from clinical samples: standardized method of analysis.

Authors:  G Palacios; O Jabado; D Cisterna; F de Ory; N Renwick; J E Echevarria; A Castellanos; M Mosquera; M C Freire; R H Campos; W I Lipkin
Journal:  J Clin Microbiol       Date:  2005-04       Impact factor: 5.948

3.  MODELTEST: testing the model of DNA substitution.

Authors:  D Posada; K A Crandall
Journal:  Bioinformatics       Date:  1998       Impact factor: 6.937

4.  A general method applicable to the search for similarities in the amino acid sequence of two proteins.

Authors:  S B Needleman; C D Wunsch
Journal:  J Mol Biol       Date:  1970-03       Impact factor: 5.469

5.  Marburgvirus genomics and association with a large hemorrhagic fever outbreak in Angola.

Authors:  Jonathan S Towner; Marina L Khristova; Tara K Sealy; Martin J Vincent; Bobbie R Erickson; Darcy A Bawiec; Amy L Hartman; James A Comer; Sherif R Zaki; Ute Ströher; Filomena Gomes da Silva; Fernando del Castillo; Pierre E Rollin; Thomas G Ksiazek; Stuart T Nichol
Journal:  J Virol       Date:  2006-07       Impact factor: 5.103

6.  Molecular identification of adenoviruses in clinical samples by analyzing a partial hexon genomic region.

Authors:  I Casas; A Avellon; M Mosquera; O Jabado; J E Echevarria; R H Campos; M Rewers; P Perez-Breña; W I Lipkin; G Palacios
Journal:  J Clin Microbiol       Date:  2005-12       Impact factor: 5.948

7.  Use of a short fragment of the C-terminal E gene for detection and characterization of two new lineages of dengue virus 1 in India.

Authors:  C Domingo; G Palacios; O Jabado; N Reyes; M Niedrig; J Gascón; M Cabrerizo; W I Lipkin; A Tenorio
Journal:  J Clin Microbiol       Date:  2006-04       Impact factor: 5.948

8.  Detection and molecular characterization of Ebola viruses causing disease in human and nonhuman primates.

Authors:  A Sanchez; T G Ksiazek; P E Rollin; M E Miranda; S G Trappier; A S Khan; C J Peters; S T Nichol
Journal:  J Infect Dis       Date:  1999-02       Impact factor: 5.226

9.  Rapid diagnosis of Ebola hemorrhagic fever by reverse transcription-PCR in an outbreak setting and assessment of patient viral load as a predictor of outcome.

Authors:  Jonathan S Towner; Pierre E Rollin; Daniel G Bausch; Anthony Sanchez; Sharon M Crary; Martin Vincent; William F Lee; Christina F Spiropoulou; Thomas G Ksiazek; Mathew Lukwiya; Felix Kaducu; Robert Downing; Stuart T Nichol
Journal:  J Virol       Date:  2004-04       Impact factor: 5.103

10.  MassTag polymerase chain reaction for differential diagnosis of viral hemorrhagic fever.

Authors:  Gustavo Palacios; Thomas Briese; Vishal Kapoor; Omar Jabado; Zhiqiang Liu; Marietjie Venter; Junhui Zhai; Neil Renwick; Allen Grolla; Thomas W Geisbert; Christian Drosten; Jonathan Towner; Jingyue Ju; Janusz Paweska; Stuart T Nichol; Robert Swanepoel; Heinz Feldmann; Peter B Jahrling; W Ian Lipkin
Journal:  Emerg Infect Dis       Date:  2006-04       Impact factor: 6.883
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  27 in total

1.  Development and evaluation of a simple assay for Marburg virus detection using a reverse transcription-loop-mediated isothermal amplification method.

Authors:  Yohei Kurosaki; Allen Grolla; Aiko Fukuma; Heinz Feldmann; Jiro Yasuda
Journal:  J Clin Microbiol       Date:  2010-04-26       Impact factor: 5.948

2.  Rapid molecular strategy for orbivirus detection and characterization.

Authors:  Gustavo Palacios; Chris Cowled; Ana V Bussetti; Nazir Savji; Richard Weir; Ivan Wick; Amelia Travassos da Rosa; Charles H Calisher; Robert B Tesh; David Boyle; W Ian Lipkin
Journal:  J Clin Microbiol       Date:  2011-03-30       Impact factor: 5.948

3.  Serological Evidence for Henipa-like and Filo-like Viruses in Trinidad Bats.

Authors:  Jonathan E Schulz; Stephanie N Seifert; John T Thompson; Victoria Avanzato; Spencer L Sterling; Lianying Yan; Michael C Letko; M Jeremiah Matson; Robert J Fischer; Alexandre Tremeau-Bravard; Janine F R Seetahal; Vernie Ramkissoon; Jerome Foster; Tracey Goldstein; Simon J Anthony; Jonathan H Epstein; Eric D Laing; Christopher C Broder; Christine V F Carrington; Tony Schountz; Vincent J Munster
Journal:  J Infect Dis       Date:  2020-05-11       Impact factor: 5.226

4.  Suspected Exposure to Filoviruses Among People Contacting Wildlife in Southwestern Uganda.

Authors:  Tierra Smiley Evans; Leonard Tutaryebwa; Kirsten V Gilardi; Peter A Barry; Andrea Marzi; Meghan Eberhardt; Benard Ssebide; Michael R Cranfield; Obed Mugisha; Emmanuel Mugisha; Scott Kellermann; Jonna A K Mazet; Christine K Johnson
Journal:  J Infect Dis       Date:  2018-11-22       Impact factor: 5.226

5.  Coronaviruses Detected in Bats in Close Contact with Humans in Rwanda.

Authors:  Julius Nziza; Tracey Goldstein; Mike Cranfield; Paul Webala; Olivier Nsengimana; Thierry Nyatanyi; Antoine Mudakikwa; Alexandre Tremeau-Bravard; Dennis Byarugaba; Jean Claude Tumushime; Ivan Emil Mwikarago; Isidore Gafarasi; Jonna Mazet; Kirsten Gilardi
Journal:  Ecohealth       Date:  2019-12-06       Impact factor: 3.184

6.  Laboratory detection and diagnosis of filoviruses.

Authors:  Yun-peng Wang; Xian-en Zhang; Hong-ping Wei
Journal:  Virol Sin       Date:  2011-04-07       Impact factor: 4.327

7.  Comparative Evaluation of the Diagnostic Performance of the Prototype Cepheid GeneXpert Ebola Assay.

Authors:  Petrus Jansen van Vuren; Antoinette Grobbelaar; Nadia Storm; Ousman Conteh; Kelfala Konneh; Abdul Kamara; Ian Sanne; Janusz T Paweska
Journal:  J Clin Microbiol       Date:  2015-12-04       Impact factor: 5.948

8.  Zoonotic viruses associated with illegally imported wildlife products.

Authors:  Kristine M Smith; Simon J Anthony; William M Switzer; Jonathan H Epstein; Tracie Seimon; Hongwei Jia; Maria D Sanchez; Thanh Thao Huynh; G Gale Galland; Sheryl E Shapiro; Jonathan M Sleeman; Denise McAloose; Margot Stuchin; George Amato; Sergios-Orestis Kolokotronis; W Ian Lipkin; William B Karesh; Peter Daszak; Nina Marano
Journal:  PLoS One       Date:  2012-01-10       Impact factor: 3.240

Review 9.  Viral hemorrhagic fevers: advancing the level of treatment.

Authors:  Giuseppe Ippolito; Heinz Feldmann; Simone Lanini; Francesco Vairo; Antonino Di Caro; Maria Rosaria Capobianchi; Emanuele Nicastri
Journal:  BMC Med       Date:  2012-03-29       Impact factor: 8.775

10.  Ebola virus antibodies in fruit bats, bangladesh.

Authors:  Kevin J Olival; Ariful Islam; Meng Yu; Simon J Anthony; Jonathan H Epstein; Shahneaz Ali Khan; Salah Uddin Khan; Gary Crameri; Lin-Fa Wang; W Ian Lipkin; Stephen P Luby; Peter Daszak
Journal:  Emerg Infect Dis       Date:  2013-02       Impact factor: 6.883
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