Literature DB >> 16333124

Molecular identification of adenoviruses in clinical samples by analyzing a partial hexon genomic region.

I Casas1, A Avellon, M Mosquera, O Jabado, J E Echevarria, R H Campos, M Rewers, P Perez-Breña, W I Lipkin, G Palacios.   

Abstract

Here we present a system for adenovirus detection and genotyping based on PCR amplification and phylogenetic analysis of a conserved hexon gene fragment. The system was validated using 157 sequences (86 previously typed and 71 clinical samples) and correctly identified species and serotype in 100% and 84% of sequences, respectively. Known associations between specific serotypes and clinical syndromes are verified. Possible new associations are described to allow further independent testing.

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Year:  2005        PMID： 16333124      PMCID： PMC1317187          DOI： 10.1128/JCM.43.12.6176-6182.2005

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  19 in total

1.  Rapid typing of human adenoviruses by a general PCR combined with restriction endonuclease analysis.

Authors:  A Allard; B Albinsson; G Wadell
Journal:  J Clin Microbiol       Date:  2001-02       Impact factor: 5.948

2.  EMBOSS: the European Molecular Biology Open Software Suite.

Authors:  P Rice; I Longden; A Bleasby
Journal:  Trends Genet       Date:  2000-06       Impact factor: 11.639

3.  There are two different species B adenovirus receptors: sBAR, common to species B1 and B2 adenoviruses, and sB2AR, exclusively used by species B2 adenoviruses.

Authors:  Anna Segerman; Niklas Arnberg; Anders Erikson; Kristina Lindman; Göran Wadell
Journal:  J Virol       Date:  2003-01       Impact factor: 5.103

4.  A general method applicable to the search for similarities in the amino acid sequence of two proteins.

Authors:  S B Needleman; C D Wunsch
Journal:  J Mol Biol       Date:  1970-03       Impact factor: 5.469

5.  Molecular epidemiology of human adenoviruses.

Authors:  G Wadell
Journal:  Curr Top Microbiol Immunol       Date:  1984       Impact factor: 4.291

6.  In vitro susceptibility of adenovirus to antiviral drugs is species-dependent.

Authors:  Florence Morfin; Sophie Dupuis-Girod; Stéphanie Mundweiler; Delphine Falcon; David Carrington; Petr Sedlacek; Marc Bierings; Petr Cetkovsky; Aloys C M Kroes; Maaoorten J D van Tol; Danielle Thouvenot
Journal:  Antivir Ther       Date:  2005

7.  Rapid and sensitive diagnosis of human adenovirus infections by a generic polymerase chain reaction.

Authors:  A Avellón; P Pérez; J C Aguilar; R Lejarazu; J E Echevarría
Journal:  J Virol Methods       Date:  2001-04       Impact factor: 2.014

8.  New genome type of adenovirus serotype 4 caused nosocomial infections associated with epidemic conjunctivitis in Japan.

Authors:  Toshihide Ariga; Yasushi Shimada; Kazuhiro Ohgami; Yoshitsugu Tagawa; Hiroaki Ishiko; Koki Aoki; Shigeaki Ohno
Journal:  J Clin Microbiol       Date:  2004-08       Impact factor: 5.948

9.  Comprehensive detection and serotyping of human adenoviruses by PCR and sequencing.

Authors:  Helen Sarantis; Grant Johnson; Martha Brown; Martin Petric; Raymond Tellier
Journal:  J Clin Microbiol       Date:  2004-09       Impact factor: 5.948

10.  Simultaneous detection of fourteen respiratory viruses in clinical specimens by two multiplex reverse transcription nested-PCR assays.

Authors:  M T Coiras; J C Aguilar; M L García; I Casas; P Pérez-Breña
Journal:  J Med Virol       Date:  2004-03       Impact factor: 2.327
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  41 in total

1.  Rapid molecular strategy for filovirus detection and characterization.

Authors:  Junhui Zhai; Gustavo Palacios; Jonathan S Towner; Omar Jabado; Vishal Kapoor; Marietjie Venter; Allen Grolla; Thomas Briese; Janusz Paweska; Robert Swanepoel; Heinz Feldmann; Stuart T Nichol; W Ian Lipkin
Journal:  J Clin Microbiol       Date:  2006-11-01       Impact factor: 5.948

2.  Characterization of the Candiru antigenic complex (Bunyaviridae: Phlebovirus), a highly diverse and reassorting group of viruses affecting humans in tropical America.

Authors:  Gustavo Palacios; Robert Tesh; Amelia Travassos da Rosa; Nazir Savji; Wilson Sze; Komal Jain; Robert Serge; Hilda Guzman; Carolina Guevara; Marcio R T Nunes; Joaquim P Nunes-Neto; Tadeusz Kochel; Stephen Hutchison; Pedro F C Vasconcelos; W Ian Lipkin
Journal:  J Virol       Date:  2011-02-02       Impact factor: 5.103

3.  Rapid molecular strategy for orbivirus detection and characterization.

Authors:  Gustavo Palacios; Chris Cowled; Ana V Bussetti; Nazir Savji; Richard Weir; Ivan Wick; Amelia Travassos da Rosa; Charles H Calisher; Robert B Tesh; David Boyle; W Ian Lipkin
Journal:  J Clin Microbiol       Date:  2011-03-30       Impact factor: 5.948

Review 4.  Adenovirus infections in immunocompetent and immunocompromised patients.

Authors:  Thomas Lion
Journal:  Clin Microbiol Rev       Date:  2014-07       Impact factor: 26.132

5.  Molecular identification of adenovirus causing respiratory tract infection in pediatric patients at the University of Malaya Medical Center.

Authors:  Juraina Abd-Jamil; Boon-Teong Teoh; Eddy H Hassan; Nuruliza Roslan; Sazaly Abubakar
Journal:  BMC Pediatr       Date:  2010-07-02       Impact factor: 2.125

6.  Granada virus: a natural phlebovirus reassortant of the sandfly fever Naples serocomplex with low seroprevalence in humans.

Authors:  Ximena Collao; Gustavo Palacios; Fernando de Ory; Sara Sanbonmatsu; Mercedes Pérez-Ruiz; José María Navarro; Ricardo Molina; Stephen K Hutchison; W Ian Lipkin; Antonio Tenorio; María Paz Sánchez-Seco
Journal:  Am J Trop Med Hyg       Date:  2010-10       Impact factor: 2.345

7.  Use of a short fragment of the C-terminal E gene for detection and characterization of two new lineages of dengue virus 1 in India.

Authors:  C Domingo; G Palacios; O Jabado; N Reyes; M Niedrig; J Gascón; M Cabrerizo; W I Lipkin; A Tenorio
Journal:  J Clin Microbiol       Date:  2006-04       Impact factor: 5.948

Review 8.  Adenoviruses in immunocompromised hosts.

Authors:  Marcela Echavarría
Journal:  Clin Microbiol Rev       Date:  2008-10       Impact factor: 26.132

9.  First report of sudden death due to myocarditis caused by adenovirus serotype 3.

Authors:  Ann Treacy; Michael J Carr; Linda Dunford; Gustavo Palacios; Gemma A Cannon; Anthony O'Grady; Julie Moran; Jaythoon Hassan; Aisling Loy; Jeff Connell; Deirdre Devaney; Peter Kelehan; William W Hall
Journal:  J Clin Microbiol       Date:  2009-11-25       Impact factor: 5.948

10.  Real-time PCR with an internal control for detection of all known human adenovirus serotypes.

Authors:  Marjolein Damen; René Minnaar; Patricia Glasius; Alwin van der Ham; Gerrit Koen; Pauline Wertheim; Marcel Beld
Journal:  J Clin Microbiol       Date:  2008-10-15       Impact factor: 5.948
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