Literature DB >> 21450948

Rapid molecular strategy for orbivirus detection and characterization.

Gustavo Palacios1, Chris Cowled, Ana V Bussetti, Nazir Savji, Richard Weir, Ivan Wick, Amelia Travassos da Rosa, Charles H Calisher, Robert B Tesh, David Boyle, W Ian Lipkin.   

Abstract

Orbiviruses infect a wide range of hosts, including humans. The ability to detect them has been hampered by their diversity. Here we present a simple consensus reverse transcription (RT)-PCR method targeting the polymerase gene for orbivirus recognition and characterization. Phylogenetic assignment is achieved by automated Web-based sequence analysis of amplification products.

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Year:  2011        PMID： 21450948      PMCID： PMC3122741          DOI： 10.1128/JCM.00337-11

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  12 in total

1.  EMBOSS: the European Molecular Biology Open Software Suite.

Authors:  P Rice; I Longden; A Bleasby
Journal:  Trends Genet       Date:  2000-06       Impact factor: 11.639

2.  MEGA2: molecular evolutionary genetics analysis software.

Authors:  S Kumar; K Tamura; I B Jakobsen; M Nei
Journal:  Bioinformatics       Date:  2001-12       Impact factor: 6.937

3.  Orbiviruses of the Kemerovo complex and neurological diseases.

Authors:  H Libíková; F Heinz; D Ujházyová; D Stünzner
Journal:  Med Microbiol Immunol       Date:  1978-11-17       Impact factor: 3.402

4.  Rapid molecular strategy for filovirus detection and characterization.

Authors:  Junhui Zhai; Gustavo Palacios; Jonathan S Towner; Omar Jabado; Vishal Kapoor; Marietjie Venter; Allen Grolla; Thomas Briese; Janusz Paweska; Robert Swanepoel; Heinz Feldmann; Stuart T Nichol; W Ian Lipkin
Journal:  J Clin Microbiol       Date:  2006-11-01       Impact factor: 5.948

5.  A general method applicable to the search for similarities in the amino acid sequence of two proteins.

Authors:  S B Needleman; C D Wunsch
Journal:  J Mol Biol       Date:  1970-03       Impact factor: 5.469

6.  Matucare virus, a new agent recovered from Ornithodoros (Alectorobius) boliviensis.

Authors:  G Justines; M L Kuns
Journal:  Am J Trop Med Hyg       Date:  1970-07       Impact factor: 2.345

7.  Molecular identification of adenoviruses in clinical samples by analyzing a partial hexon genomic region.

Authors:  I Casas; A Avellon; M Mosquera; O Jabado; J E Echevarria; R H Campos; M Rewers; P Perez-Breña; W I Lipkin; G Palacios
Journal:  J Clin Microbiol       Date:  2005-12       Impact factor: 5.948

8.  Use of a short fragment of the C-terminal E gene for detection and characterization of two new lineages of dengue virus 1 in India.

Authors:  C Domingo; G Palacios; O Jabado; N Reyes; M Niedrig; J Gascón; M Cabrerizo; W I Lipkin; A Tenorio
Journal:  J Clin Microbiol       Date:  2006-04       Impact factor: 5.948

9.  Peruvian horse sickness virus and Yunnan orbivirus, isolated from vertebrates and mosquitoes in Peru and Australia.

Authors:  Houssam Attoui; Maria Rosario Mendez-Lopez; Shujing Rao; Ana Hurtado-Alendes; Frank Lizaraso-Caparo; Fauziah Mohd Jaafar; Alan R Samuel; Mourad Belhouchet; Lindsay I Pritchard; Lorna Melville; Richard P Weir; Alex D Hyatt; Steven S Davis; Ross Lunt; Charles H Calisher; Robert B Tesh; Ricardo Fujita; Peter P C Mertens
Journal:  Virology       Date:  2009-09-18       Impact factor: 3.616

10.  Greene SCPrimer: a rapid comprehensive tool for designing degenerate primers from multiple sequence alignments.

Authors:  Omar J Jabado; Gustavo Palacios; Vishal Kapoor; Jeffrey Hui; Neil Renwick; Junhui Zhai; Thomas Briese; W Ian Lipkin
Journal:  Nucleic Acids Res       Date:  2006-11-28       Impact factor: 16.971
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  9 in total

1.  Genetic and biological characterization of selected Changuinola viruses (Reoviridae, Orbivirus) from Brazil.

Authors:  Sandro P Silva; Meik Dilcher; Franziska Weber; Frank T Hufert; Manfred Weidmann; Jedson F Cardoso; Valéria L Carvalho; Jannifer O Chiang; Lívia C Martins; Clayton P S Lima; Daisy E A Da Silva; João L S G Vianez-Júnior; Vsevolod L Popov; Amélia P A Travassos da Rosa; Robert B Tesh; Pedro F C Vasconcelos; Márcio R T Nunes
Journal:  J Gen Virol       Date:  2014-07-01       Impact factor: 3.891

2.  A novel mosquito-borne Orbivirus species found in South-east Asia.

Authors:  Amit Kapoor; Robert B Tesh; Raja Duraisamy; Vsevolod L Popov; Amelia P A Travassos da Rosa; W Ian Lipkin
Journal:  J Gen Virol       Date:  2013-01-30       Impact factor: 3.891

3.  Detection and identification of putative bacterial endosymbionts and endogenous viruses in tick cell lines.

Authors:  M Pilar Alberdi; Matthew J Dalby; Julio Rodriguez-Andres; John K Fazakerley; Alain Kohl; Lesley Bell-Sakyi
Journal:  Ticks Tick Borne Dis       Date:  2012-06-27       Impact factor: 3.744

Review 4.  Rapid molecular detection methods for arboviruses of livestock of importance to northern Europe.

Authors:  Nicholas Johnson; Katja Voller; L Paul Phipps; Karen Mansfield; Anthony R Fooks
Journal:  J Biomed Biotechnol       Date:  2011-12-15

5.  Effective mosquito and arbovirus surveillance using metabarcoding.

Authors:  J Batovska; S E Lynch; N O I Cogan; K Brown; J M Darbro; E A Kho; M J Blacket
Journal:  Mol Ecol Resour       Date:  2017-05-15       Impact factor: 7.090

6.  A new cluster of rhabdovirus detected in field-caught sand flies (Diptera: Psychodidae: Phlebotominae) collected from southern Thailand.

Authors:  Atchara Phumee; Supaporn Wacharapluesadee; Sininat Petcharat; Padet Siriyasatien
Journal:  Parasit Vectors       Date:  2021-11-08       Impact factor: 3.876

Review 7.  Endogenous tick viruses and modulation of tick-borne pathogen growth.

Authors:  Lesley Bell-Sakyi; Houssam Attoui
Journal:  Front Cell Infect Microbiol       Date:  2013-07-12       Impact factor: 5.293

8.  Viral Diversity, Prey Preference, and Bartonella Prevalence in Desmodus rotundus in Guatemala.

Authors:  Amy K Wray; Kevin J Olival; David Morán; Maria Renee Lopez; Danilo Alvarez; Isamara Navarrete-Macias; Eliza Liang; Nancy B Simmons; W Ian Lipkin; Peter Daszak; Simon J Anthony
Journal:  Ecohealth       Date:  2016-09-22       Impact factor: 3.184

9.  Encephalitis induced by a newly discovered ruminant rhadinovirus in a free-living Formosan sambar deer (Rusa unicolor swinhoei).

Authors:  Ai-Mei Chang; Chen-Chih Chen; Ching-Dong Chang; Yen-Li Huang; Guan-Ming Ke; Bruno Andreas Walther
Journal:  J Vet Med Sci       Date:  2018-04-02       Impact factor: 1.267
  9 in total

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