Literature DB >> 17073453

Membrane-bound conformation and topology of the antimicrobial peptide tachyplesin I by solid-state NMR.

Tim Doherty1, Alan J Waring, M Hong.   

Abstract

The conformation and membrane topology of the disulfide-stabilized antimicrobial peptide tachyplesin I (TP) in lipid bilayers are determined by solid-state NMR spectroscopy. The backbone (phi and psi) torsion angles of Val(6) are found to be -133 degrees and 142 degrees , respectively, and the Val(6) CO-Phe(8) H(N) distance is 4.6 A. These constrain the middle of the N-terminal strand to a relatively ideal antiparallel beta-sheet conformation. In contrast, the phi angle of Gly(10) is +/-85 degrees , consistent with a beta-turn conformation. Thus, TP adopts a beta-hairpin conformation with straight strands, similar to its structure in aqueous solution but different from a recently reported structure in DPC micelles where bending of the two beta-strands was observed. The Val(6) and Gly(10) CO groups are both 6.8 A from the lipid (31)P, while the Val(6) side chain is in (1)H spin diffusion contact with the lipid acyl chains. These results suggest that TP is immersed in the glycerol backbone region of the membrane and is oriented roughly parallel to the plane of the membrane. This depth of insertion and orientation differs from those of the analogous beta-sheet antimicrobial peptide protegrin-1 and suggest the importance of structural amphiphilicity in determining the location and orientation of membrane peptides in lipid bilayers.

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Year:  2006        PMID: 17073453     DOI: 10.1021/bi061424u

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  13 in total

1.  Structure and dynamics of cationic membrane peptides and proteins: insights from solid-state NMR.

Authors:  Mei Hong; Yongchao Su
Journal:  Protein Sci       Date:  2011-03-07       Impact factor: 6.725

2.  Implicit Membrane Investigation of the Stability of Antimicrobial Peptide β-Barrels and Arcs.

Authors:  Richard B Lipkin; Themis Lazaridis
Journal:  J Membr Biol       Date:  2014-11-28       Impact factor: 1.843

3.  Solid-state nuclear magnetic resonance measurements of HIV fusion peptide 13CO to lipid 31P proximities support similar partially inserted membrane locations of the α helical and β sheet peptide structures.

Authors:  Charles M Gabrys; Wei Qiang; Yan Sun; Li Xie; Scott D Schmick; David P Weliky
Journal:  J Phys Chem A       Date:  2013-02-28       Impact factor: 2.781

4.  Transmembrane Pore Structures of β-Hairpin Antimicrobial Peptides by All-Atom Simulations.

Authors:  Richard Lipkin; Almudena Pino-Angeles; Themis Lazaridis
Journal:  J Phys Chem B       Date:  2017-09-21       Impact factor: 2.991

5.  Residue-specific membrane location of peptides and proteins using specifically and extensively deuterated lipids and ¹³C-²H rotational-echo double-resonance solid-state NMR.

Authors:  Li Xie; Ujjayini Ghosh; Scott D Schmick; David P Weliky
Journal:  J Biomol NMR       Date:  2012-12-08       Impact factor: 2.835

6.  Effects of arginine density on the membrane-bound structure of a cationic antimicrobial peptide from solid-state NMR.

Authors:  Ming Tang; Alan J Waring; Mei Hong
Journal:  Biochim Biophys Acta       Date:  2008-11-14

7.  Resonance assignment and three-dimensional structure determination of a human alpha-defensin, HNP-1, by solid-state NMR.

Authors:  Yuan Zhang; Tim Doherty; Jing Li; Wuyuan Lu; Cyril Barinka; Jacek Lubkowski; Mei Hong
Journal:  J Mol Biol       Date:  2010-01-22       Impact factor: 5.469

Review 8.  Cationic membrane peptides: atomic-level insight of structure-activity relationships from solid-state NMR.

Authors:  Yongchao Su; Shenhui Li; Mei Hong
Journal:  Amino Acids       Date:  2012-10-30       Impact factor: 3.520

9.  2D 1H-31P solid-state NMR studies of the dependence of inter-bilayer water dynamics on lipid headgroup structure and membrane peptides.

Authors:  Tim Doherty; Mei Hong
Journal:  J Magn Reson       Date:  2008-10-05       Impact factor: 2.229

10.  Protein structure refinement using 13C alpha chemical shift tensors.

Authors:  Benjamin J Wylie; Charles D Schwieters; Eric Oldfield; Chad M Rienstra
Journal:  J Am Chem Soc       Date:  2009-01-28       Impact factor: 15.419

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