Literature DB >> 23225071

Residue-specific membrane location of peptides and proteins using specifically and extensively deuterated lipids and ¹³C-²H rotational-echo double-resonance solid-state NMR.

Li Xie1, Ujjayini Ghosh, Scott D Schmick, David P Weliky.   

Abstract

Residue-specific location of peptides in the hydrophobic core of membranes was examined using (13)C-(2)H REDOR and samples in which the lipids were selectively deuterated. The transmembrane topology of the KALP peptide was validated with this approach with substantial dephasing observed for deuteration in the bilayer center and reduced or no dephasing for deuteration closer to the headgroups. Insertion of β sheet HIV and helical and β sheet influenza virus fusion peptides into the hydrophobic core of the membrane was validated in samples with extensively deuterated lipids.

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Year:  2012        PMID: 23225071      PMCID: PMC3557618          DOI: 10.1007/s10858-012-9692-8

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  24 in total

1.  Solid-state nuclear magnetic resonance evidence for an extended beta strand conformation of the membrane-bound HIV-1 fusion peptide.

Authors:  J Yang; C M Gabrys; D P Weliky
Journal:  Biochemistry       Date:  2001-07-10       Impact factor: 3.162

2.  Membrane-bound conformation and topology of the antimicrobial peptide tachyplesin I by solid-state NMR.

Authors:  Tim Doherty; Alan J Waring; M Hong
Journal:  Biochemistry       Date:  2006-11-07       Impact factor: 3.162

Review 3.  Structure and dynamics of membrane proteins by magic angle spinning solid-state NMR.

Authors:  Ann McDermott
Journal:  Annu Rev Biophys       Date:  2009       Impact factor: 12.981

Review 4.  Structures and mechanisms of viral membrane fusion proteins: multiple variations on a common theme.

Authors:  Judith M White; Sue E Delos; Matthew Brecher; Kathryn Schornberg
Journal:  Crit Rev Biochem Mol Biol       Date:  2008 May-Jun       Impact factor: 8.250

5.  A strong correlation between fusogenicity and membrane insertion depth of the HIV fusion peptide.

Authors:  Wei Qiang; Yan Sun; David P Weliky
Journal:  Proc Natl Acad Sci U S A       Date:  2009-08-24       Impact factor: 11.205

6.  Solid-state NMR spectroscopy of human immunodeficiency virus fusion peptides associated with host-cell-like membranes: 2D correlation spectra and distance measurements support a fully extended conformation and models for specific antiparallel strand registries.

Authors:  Wei Qiang; Michele L Bodner; David P Weliky
Journal:  J Am Chem Soc       Date:  2008-03-28       Impact factor: 15.419

7.  Sensitivity of single membrane-spanning alpha-helical peptides to hydrophobic mismatch with a lipid bilayer: effects on backbone structure, orientation, and extent of membrane incorporation.

Authors:  M R de Planque; E Goormaghtigh; D V Greathouse; R E Koeppe ; J A Kruijtzer; R M Liskamp; B de Kruijff; J A Killian
Journal:  Biochemistry       Date:  2001-04-24       Impact factor: 3.162

8.  Conformational flexibility and strand arrangements of the membrane-associated HIV fusion peptide trimer probed by solid-state NMR spectroscopy.

Authors:  Zhaoxiong Zheng; Rong Yang; Michele L Bodner; David P Weliky
Journal:  Biochemistry       Date:  2006-10-31       Impact factor: 3.162

9.  Membrane protein topology probed by (1)H spin diffusion from lipids using solid-state NMR spectroscopy.

Authors:  Daniel Huster; Xiaolan Yao; Mei Hong
Journal:  J Am Chem Soc       Date:  2002-02-06       Impact factor: 15.419

10.  Amyloid fibril formation by A beta 16-22, a seven-residue fragment of the Alzheimer's beta-amyloid peptide, and structural characterization by solid state NMR.

Authors:  J J Balbach; Y Ishii; O N Antzutkin; R D Leapman; N W Rizzo; F Dyda; J Reed; R Tycko
Journal:  Biochemistry       Date:  2000-11-14       Impact factor: 3.162

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  8 in total

1.  Solid-state nuclear magnetic resonance measurements of HIV fusion peptide 13CO to lipid 31P proximities support similar partially inserted membrane locations of the α helical and β sheet peptide structures.

Authors:  Charles M Gabrys; Wei Qiang; Yan Sun; Li Xie; Scott D Schmick; David P Weliky
Journal:  J Phys Chem A       Date:  2013-02-28       Impact factor: 2.781

2.  REDOR solid-state NMR as a probe of the membrane locations of membrane-associated peptides and proteins.

Authors:  Lihui Jia; Shuang Liang; Kelly Sackett; Li Xie; Ujjayini Ghosh; David P Weliky
Journal:  J Magn Reson       Date:  2015-04       Impact factor: 2.229

3.  2H nuclear magnetic resonance spectroscopy supports larger amplitude fast motion and interference with lipid chain ordering for membrane that contains β sheet human immunodeficiency virus gp41 fusion peptide or helical hairpin influenza virus hemagglutinin fusion peptide at fusogenic pH.

Authors:  Ujjayini Ghosh; David P Weliky
Journal:  Biochim Biophys Acta Biomembr       Date:  2020-06-23       Impact factor: 3.747

Review 4.  Magic angle spinning NMR of viruses.

Authors:  Caitlin M Quinn; Manman Lu; Christopher L Suiter; Guangjin Hou; Huilan Zhang; Tatyana Polenova
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2015-02-16       Impact factor: 9.795

5.  Prebiotic amino acids bind to and stabilize prebiotic fatty acid membranes.

Authors:  Caitlin E Cornell; Roy A Black; Mengjun Xue; Helen E Litz; Andrew Ramsay; Moshe Gordon; Alexander Mileant; Zachary R Cohen; James A Williams; Kelly K Lee; Gary P Drobny; Sarah L Keller
Journal:  Proc Natl Acad Sci U S A       Date:  2019-08-12       Impact factor: 12.779

6.  Residue-specific structures and membrane locations of pH-low insertion peptide by solid-state nuclear magnetic resonance.

Authors:  Nicolas S Shu; Michael S Chung; Lan Yao; Ming An; Wei Qiang
Journal:  Nat Commun       Date:  2015-07-21       Impact factor: 14.919

7.  Multiple locations of peptides in the hydrocarbon core of gel-phase membranes revealed by peptide (13)C to lipid (2)H rotational-echo double-resonance solid-state nuclear magnetic resonance.

Authors:  Li Xie; Lihui Jia; Shuang Liang; David P Weliky
Journal:  Biochemistry       Date:  2015-01-09       Impact factor: 3.162

8.  Integrated solid-state NMR and molecular dynamics modeling determines membrane insertion of human β-defensin analog.

Authors:  Xue Kang; Christopher Elson; Jackson Penfield; Alex Kirui; Adrian Chen; Liqun Zhang; Tuo Wang
Journal:  Commun Biol       Date:  2019-11-01
  8 in total

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