Literature DB >> 19123862

Protein structure refinement using 13C alpha chemical shift tensors.

Benjamin J Wylie1, Charles D Schwieters, Eric Oldfield, Chad M Rienstra.   

Abstract

We have obtained the (13)C alpha chemical shift tensors for each amino acid in the protein GB1. We then developed a CST force field and incorporated this into the Xplor-NIH structure determination program. GB1 structures obtained by using CST restraints had improved precision over those obtained in the absence of CST restraints and were also more accurate. When combined with isotropic chemical shifts, distance, and vector angle restraints, the root-mean squared error with respect to existing X-ray structures was better than approximately 1.0 A. These results are of broad general interest since they show that chemical shift tensors can be used in protein structure refinement, improving both structural accuracy and precision, opening up the way to accurate de novo structure determination.

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Year:  2009        PMID: 19123862      PMCID: PMC2751586          DOI: 10.1021/ja804041p

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  43 in total

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4.  Protein backbone angle restraints from searching a database for chemical shift and sequence homology.

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7.  Crystal structures of myoglobin-ligand complexes at near-atomic resolution.

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Review 9.  Chemical shifts and three-dimensional protein structures.

Authors:  E Oldfield
Journal:  J Biomol NMR       Date:  1995-04       Impact factor: 2.835

10.  Secondary and tertiary structural effects on protein NMR chemical shifts: an ab initio approach.

Authors:  A C de Dios; J G Pearson; E Oldfield
Journal:  Science       Date:  1993-06-04       Impact factor: 47.728

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  21 in total

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2.  VITAL NMR: using chemical shift derived secondary structure information for a limited set of amino acids to assess homology model accuracy.

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3.  Ultrahigh resolution protein structures using NMR chemical shift tensors.

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Review 4.  NMR studies of dynamic biomolecular conformational ensembles.

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Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2014-11-28       Impact factor: 9.795

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6.  Atomic resolution protein structure determination by three-dimensional transferred echo double resonance solid-state nuclear magnetic resonance spectroscopy.

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Review 7.  Structural biology of supramolecular assemblies by magic-angle spinning NMR spectroscopy.

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8.  31P-dephased, 13C-detected REDOR for NMR crystallography at natural isotopic abundance.

Authors:  Alexander I Greenwood; Mary C Clay; Chad M Rienstra
Journal:  J Magn Reson       Date:  2017-02-28       Impact factor: 2.229

9.  Determination of 15N chemical shift anisotropy from a membrane-bound protein by NMR spectroscopy.

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10.  3D (13)C-(13)C-(13)C correlation NMR for de novo distance determination of solid proteins and application to a human alpha-defensin.

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Journal:  J Magn Reson       Date:  2009-11-18       Impact factor: 2.229

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