Literature DB >> 17073318

An efficient numerical technique for the solution of the monodomain and bidomain equations.

Jonathan P Whiteley1.   

Abstract

Most numerical schemes for solving the monodomain or bidomain equations use a forward approximation to some or all of the time derivatives. This approach, however, constrains the maximum timestep that may be used by stability considerations as well as accuracy considerations. Stability may be ensured by using a backward approximation to all time derivatives, although this approach requires the solution of a very large system of nonlinear equations at each timestep which is computationally prohibitive. In this paper we propose a semi-implicit algorithm that ensures stability. A linear system is solved on each timestep to update the transmembrane potential and, if the bidomain equations are being used, the extracellular potential. The remainder of the equations to be solved uncouple into small systems of ordinary differential equations. The backward Euler method may be used to solve these systems and guarantee numerical stability: as these systems are small, only the solution of small nonlinear systems are required. Simulations are carried out to show that the use of this algorithm allows much larger timesteps to be used with only a minimal loss of accuracy. As a result of using these longer timesteps the computation time may be reduced substantially.

Mesh:

Year:  2006        PMID: 17073318     DOI: 10.1109/TBME.2006.879425

Source DB:  PubMed          Journal:  IEEE Trans Biomed Eng        ISSN: 0018-9294            Impact factor:   4.538


  16 in total

1.  Simulation of biatrial conduction via different pathways during sinus rhythm with a detailed human atrial model.

Authors:  Dong-dong Deng; Ying-lan Gong; Guo-fa Shou; Pei-feng Jiao; Heng-gui Zhang; Xue-song Ye; Ling Xia
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2.  Rabbit-specific ventricular model of cardiac electrophysiological function including specialized conduction system.

Authors:  R Bordas; K Gillow; Q Lou; I R Efimov; D Gavaghan; P Kohl; V Grau; B Rodriguez
Journal:  Prog Biophys Mol Biol       Date:  2011-06-13       Impact factor: 3.667

3.  Semi-implicit Non-conforming Finite-Element Schemes for Cardiac Electrophysiology: A Framework for Mesh-Coarsening Heart Simulations.

Authors:  Javiera Jilberto; Daniel E Hurtado
Journal:  Front Physiol       Date:  2018-10-30       Impact factor: 4.566

4.  Potential Maintenance Mechanism in Atrial Fibrillation Patients Subject to Different Treatment Procedures: A Preliminary Study Based on a Human Atrial Model.

Authors:  Zhao-Lian Ouyang; Li-Ping Sun; Hui Chi; Ling Xia; Ying-Lan Gong; Yu-Bo Fan
Journal:  Curr Med Sci       Date:  2018-06-22

5.  Key aspects for effective mathematical modelling of fractional-diffusion in cardiac electrophysiology: a quantitative study.

Authors:  N Cusimano; A Gizzi; F H Fenton; S Filippi; L Gerardo-Giorda
Journal:  Commun Nonlinear Sci Numer Simul       Date:  2019-12-25       Impact factor: 4.260

6.  Solving the coupled system improves computational efficiency of the bidomain equations.

Authors:  James A Southern; Gernot Plank; Edward J Vigmond; Jonathan P Whiteley
Journal:  IEEE Trans Biomed Eng       Date:  2009-05-19       Impact factor: 4.538

7.  Numerical quadrature and operator splitting in finite element methods for cardiac electrophysiology.

Authors:  Shankarjee Krishnamoorthi; Mainak Sarkar; William S Klug
Journal:  Int J Numer Method Biomed Eng       Date:  2013-07-19       Impact factor: 2.747

Review 8.  From mitochondrial ion channels to arrhythmias in the heart: computational techniques to bridge the spatio-temporal scales.

Authors:  Gernot Plank; Lufang Zhou; Joseph L Greenstein; Sonia Cortassa; Raimond L Winslow; Brian O'Rourke; Natalia A Trayanova
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2008-09-28       Impact factor: 4.226

9.  Generation of histo-anatomically representative models of the individual heart: tools and application.

Authors:  Gernot Plank; Rebecca A B Burton; Patrick Hales; Martin Bishop; Tahir Mansoori; Miguel O Bernabeu; Alan Garny; Anton J Prassl; Christian Bollensdorff; Fleur Mason; Fahd Mahmood; Blanca Rodriguez; Vicente Grau; Jürgen E Schneider; David Gavaghan; Peter Kohl
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2009-06-13       Impact factor: 4.226

10.  An image-based model of the whole human heart with detailed anatomical structure and fiber orientation.

Authors:  Dongdong Deng; Peifeng Jiao; Xuesong Ye; Ling Xia
Journal:  Comput Math Methods Med       Date:  2012-08-17       Impact factor: 2.238

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