Literature DB >> 18603526

From mitochondrial ion channels to arrhythmias in the heart: computational techniques to bridge the spatio-temporal scales.

Gernot Plank1, Lufang Zhou, Joseph L Greenstein, Sonia Cortassa, Raimond L Winslow, Brian O'Rourke, Natalia A Trayanova.   

Abstract

Computer simulations of electrical behaviour in the whole ventricles have become commonplace during the last few years. The goals of this article are (i) to review the techniques that are currently employed to model cardiac electrical activity in the heart, discussing the strengths and weaknesses of the various approaches, and (ii) to implement a novel modelling approach, based on physiological reasoning, that lifts some of the restrictions imposed by current state-of-the-art ionic models. To illustrate the latter approach, the present study uses a recently developed ionic model of the ventricular myocyte that incorporates an excitation-contraction coupling and mitochondrial energetics model. A paradigm to bridge the vastly disparate spatial and temporal scales, from subcellular processes to the entire organ, and from sub-microseconds to minutes, is presented. Achieving sufficient computational efficiency is the key to success in the quest to develop multiscale realistic models that are expected to lead to better understanding of the mechanisms of arrhythmia induction following failure at the organelle level, and ultimately to the development of novel therapeutic applications.

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Year:  2008        PMID: 18603526      PMCID: PMC2778066          DOI: 10.1098/rsta.2008.0112

Source DB:  PubMed          Journal:  Philos Trans A Math Phys Eng Sci        ISSN: 1364-503X            Impact factor:   4.226


  79 in total

1.  Linking a genetic defect to its cellular phenotype in a cardiac arrhythmia.

Authors:  C E Clancy; Y Rudy
Journal:  Nature       Date:  1999-08-05       Impact factor: 49.962

2.  A computational model of the human left-ventricular epicardial myocyte.

Authors:  Vivek Iyer; Reza Mazhari; Raimond L Winslow
Journal:  Biophys J       Date:  2004-09       Impact factor: 4.033

3.  Parallel multigrid preconditioner for the cardiac bidomain model.

Authors:  Rodrigo Weber dos Santos; Gernot Plank; Steffen Bauer; Edward J Vigmond
Journal:  IEEE Trans Biomed Eng       Date:  2004-11       Impact factor: 4.538

4.  A comparison of monodomain and bidomain reaction-diffusion models for action potential propagation in the human heart.

Authors:  Mark Potse; Bruno Dubé; Jacques Richer; Alain Vinet; Ramesh M Gulrajani
Journal:  IEEE Trans Biomed Eng       Date:  2006-12       Impact factor: 4.538

Review 5.  From pulsus to pulseless: the saga of cardiac alternans.

Authors:  James N Weiss; Alain Karma; Yohannes Shiferaw; Peng-Sheng Chen; Alan Garfinkel; Zhilin Qu
Journal:  Circ Res       Date:  2006-05-26       Impact factor: 17.367

6.  Arrhythmogenic consequences of Na+ channel mutations in the transmurally heterogeneous mammalian left ventricle: analysis of the I1768V SCN5A mutation.

Authors:  Sarah N Flaim; Wayne R Giles; Andrew D McCulloch
Journal:  Heart Rhythm       Date:  2007-02-20       Impact factor: 6.343

7.  Defibrillation depends on conductivity fluctuations and the degree of disorganization in reentry patterns.

Authors:  Gernot Plank; L Joshua Leon; Shane Kimber; Edward J Vigmond
Journal:  J Cardiovasc Electrophysiol       Date:  2005-02

8.  Current injection into a two-dimensional anisotropic bidomain.

Authors:  N G Sepulveda; B J Roth; J P Wikswo
Journal:  Biophys J       Date:  1989-05       Impact factor: 4.033

9.  A simulation study of the effects of cardiac anatomy in ventricular fibrillation.

Authors:  Fagen Xie; Zhilin Qu; Junzhong Yang; Ali Baher; James N Weiss; Alan Garfinkel
Journal:  J Clin Invest       Date:  2004-03       Impact factor: 14.808

10.  Organization of ventricular fibrillation in the human heart.

Authors:  Kirsten H W J Ten Tusscher; Rok Hren; Alexander V Panfilov
Journal:  Circ Res       Date:  2007-05-31       Impact factor: 17.367

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  76 in total

1.  Verification of cardiac tissue electrophysiology simulators using an N-version benchmark.

Authors:  Steven A Niederer; Eric Kerfoot; Alan P Benson; Miguel O Bernabeu; Olivier Bernus; Chris Bradley; Elizabeth M Cherry; Richard Clayton; Flavio H Fenton; Alan Garny; Elvio Heidenreich; Sander Land; Mary Maleckar; Pras Pathmanathan; Gernot Plank; José F Rodríguez; Ishani Roy; Frank B Sachse; Gunnar Seemann; Ola Skavhaug; Nic P Smith
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2011-11-13       Impact factor: 4.226

Review 2.  Modeling defibrillation of the heart: approaches and insights.

Authors:  Natalia Trayanova; Jason Constantino; Takashi Ashihara; Gernot Plank
Journal:  IEEE Rev Biomed Eng       Date:  2011

3.  Image-based estimation of ventricular fiber orientations for personalized modeling of cardiac electrophysiology.

Authors:  Fijoy Vadakkumpadan; Hermenegild Arevalo; Can Ceritoglu; Michael Miller; Natalia Trayanova
Journal:  IEEE Trans Med Imaging       Date:  2012-01-18       Impact factor: 10.048

4.  Electromechanical wave imaging for noninvasive mapping of the 3D electrical activation sequence in canines and humans in vivo.

Authors:  Elisa E Konofagou; Jean Provost
Journal:  J Biomech       Date:  2012-01-26       Impact factor: 2.712

5.  Role of 3-Dimensional Architecture of Scar and Surviving Tissue in Ventricular Tachycardia: Insights From High-Resolution Ex Vivo Porcine Models.

Authors:  Farhad Pashakhanloo; Daniel A Herzka; Henry Halperin; Elliot R McVeigh; Natalia A Trayanova
Journal:  Circ Arrhythm Electrophysiol       Date:  2018-06

Review 6.  Mathematical approaches to understanding and imaging atrial fibrillation: significance for mechanisms and management.

Authors:  Natalia A Trayanova
Journal:  Circ Res       Date:  2014-04-25       Impact factor: 17.367

7.  Nonlinear and Stochastic Dynamics in the Heart.

Authors:  Zhilin Qu; Gang Hu; Alan Garfinkel; James N Weiss
Journal:  Phys Rep       Date:  2014-10-10       Impact factor: 25.600

8.  Patient-specific modeling of the heart: estimation of ventricular fiber orientations.

Authors:  Fijoy Vadakkumpadan; Hermenegild Arevalo; Natalia A Trayanova
Journal:  J Vis Exp       Date:  2013-01-08       Impact factor: 1.355

9.  Near-real-time simulations of biolelectric activity in small mammalian hearts using graphical processing units.

Authors:  Edward J Vigmond; Patrick M Boyle; L Leon; Gernot Plank
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2009

10.  Computational prediction of the effect of D172N KCNJ2 mutation on ventricular pumping during sinus rhythm and reentry.

Authors:  Aulia Khamas Heikhmakhtiar; Chung Hao Lee; Kwang Soup Song; Ki Moo Lim
Journal:  Med Biol Eng Comput       Date:  2020-02-24       Impact factor: 2.602

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