Literature DB >> 17071742

Statistics of cellular signal transduction as a race to the nucleus by multiple random walkers in compartment/phosphorylation space.

Ting Lu1, Tongye Shen, Chenghang Zong, Jeff Hasty, Peter G Wolynes.   

Abstract

Cellular signal transduction often involves a reaction network of phosphorylation and transport events arranged with a ladder topology. If we keep track of the location of the phosphate groups describing an abstract state space, a simple model of signal transduction involving enzymes can be mapped on to a problem of how multiple biased random walkers compete to reach their target in the nucleus yielding a signal. Here, the first passage time probability and the survival probability for multiple walkers can be used to characterize the response of the network. The statistics of the first passage through the network has an asymmetric distribution with a long tail arising from the hierarchical structure of the network. This distribution implies a significant difference between the mean and the most probable signal transduction time. The response patterns for various external inputs generated by our model agree with recent experiments. In addition, the model predicts that there is an optimal phosphorylation enzyme concentration for rapid signal transduction.

Entities:  

Mesh:

Substances:

Year:  2006        PMID: 17071742      PMCID: PMC1636527          DOI: 10.1073/pnas.0607698103

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  22 in total

Review 1.  NFAT signaling: choreographing the social lives of cells.

Authors:  Gerald R Crabtree; Eric N Olson
Journal:  Cell       Date:  2002-04       Impact factor: 41.582

Review 2.  Noise in a minimal regulatory network: plasmid copy number control.

Authors:  J Paulsson; M Ehrenberg
Journal:  Q Rev Biophys       Date:  2001-02       Impact factor: 5.318

Review 3.  Sensitivity and specificity amplification in signal transduction.

Authors:  Guangpu Li; Hong Qian
Journal:  Cell Biochem Biophys       Date:  2003       Impact factor: 2.194

Review 4.  ERK and p38 MAPK-activated protein kinases: a family of protein kinases with diverse biological functions.

Authors:  Philippe P Roux; John Blenis
Journal:  Microbiol Mol Biol Rev       Date:  2004-06       Impact factor: 11.056

Review 5.  Transcriptional regulation by calcium, calcineurin, and NFAT.

Authors:  Patrick G Hogan; Lin Chen; Julie Nardone; Anjana Rao
Journal:  Genes Dev       Date:  2003-09-15       Impact factor: 11.361

Review 6.  Transcription factors of the NFAT family: regulation and function.

Authors:  A Rao; C Luo; P G Hogan
Journal:  Annu Rev Immunol       Date:  1997       Impact factor: 28.527

7.  The biochemical basis of an all-or-none cell fate switch in Xenopus oocytes.

Authors:  J E Ferrell; E M Machleder
Journal:  Science       Date:  1998-05-08       Impact factor: 47.728

8.  Differential activation of transcription factors induced by Ca2+ response amplitude and duration.

Authors:  R E Dolmetsch; R S Lewis; C C Goodnow; J I Healy
Journal:  Nature       Date:  1997-04-24       Impact factor: 49.962

9.  Ultrasensitivity in the mitogen-activated protein kinase cascade.

Authors:  C Y Huang; J E Ferrell
Journal:  Proc Natl Acad Sci U S A       Date:  1996-09-17       Impact factor: 11.205

10.  Processive phosphorylation of alternative splicing factor/splicing factor 2.

Authors:  Brandon E Aubol; Sutapa Chakrabarti; Jacky Ngo; Jennifer Shaffer; Brad Nolen; Xiang-Dong Fu; Gourisankar Ghosh; Joseph A Adams
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-10       Impact factor: 11.205

View more
  15 in total

1.  Population-Dynamic Modeling of Bacterial Horizontal Gene Transfer by Natural Transformation.

Authors:  Junwen Mao; Ting Lu
Journal:  Biophys J       Date:  2016-01-05       Impact factor: 4.033

2.  Phenotypic variability of growing cellular populations.

Authors:  Ting Lu; Tongye Shen; Matthew R Bennett; Peter G Wolynes; Jeff Hasty
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-19       Impact factor: 11.205

3.  The stochastic dynamics of filopodial growth.

Authors:  Yueheng Lan; Garegin A Papoian
Journal:  Biophys J       Date:  2008-01-30       Impact factor: 4.033

4.  Three-state kinetic mechanism for scaffold-mediated signal transduction.

Authors:  Jason W Locasale
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2008-11-21

Review 5.  Stochastic Hybrid Systems in Cellular Neuroscience.

Authors:  Paul C Bressloff; James N Maclaurin
Journal:  J Math Neurosci       Date:  2018-08-22       Impact factor: 1.300

6.  Derivation of Ca2+ signals from puff properties reveals that pathway function is robust against cell variability but sensitive for control.

Authors:  Kevin Thurley; Martin Falcke
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-20       Impact factor: 11.205

7.  Relating cellular signaling timescales to single-molecule kinetics: A first-passage time analysis of Ras activation by SOS.

Authors:  William Y C Huang; Steven Alvarez; Yasushi Kondo; John Kuriyan; Jay T Groves
Journal:  Proc Natl Acad Sci U S A       Date:  2021-11-09       Impact factor: 12.779

8.  On the architecture of cell regulation networks.

Authors:  Yueheng Lan; Igor Mezić
Journal:  BMC Syst Biol       Date:  2011-03-02

9.  Communicating oscillatory networks: frequency domain analysis.

Authors:  Adaoha E C Ihekwaba; Sean Sedwards
Journal:  BMC Syst Biol       Date:  2011-12-22

10.  Hierarchic stochastic modelling applied to intracellular Ca(2+) signals.

Authors:  Gregor Moenke; Martin Falcke; Keven Thurley
Journal:  PLoS One       Date:  2012-12-27       Impact factor: 3.240

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.