Literature DB >> 21173273

Derivation of Ca2+ signals from puff properties reveals that pathway function is robust against cell variability but sensitive for control.

Kevin Thurley1, Martin Falcke.   

Abstract

Ca(2+) is a universal second messenger in eukaryotic cells transmitting information through sequences of concentration spikes. A prominent mechanism to generate these spikes involves Ca(2+) release from the endoplasmic reticulum Ca(2+) store via inositol 1,4,5-trisphosphate (IP(3))-sensitive channels. Puffs are elemental events of IP(3)-induced Ca(2+) release through single clusters of channels. Intracellular Ca(2+) dynamics are a stochastic system, but a complete stochastic theory has not been developed yet. We formulate the theory in terms of interpuff interval and puff duration distributions because, unlike the properties of individual channels, they can be measured in vivo. Our theory reproduces the typical spectrum of Ca(2+) signals like puffs, spiking, and bursting in analytically treatable test cases as well as in more realistic simulations. We find conditions for spiking and calculate interspike interval (ISI) distributions. Signal form, average ISI and ISI distributions depend sensitively on the details of cluster properties and their spatial arrangement. In contrast to that, the relation between the average and the standard deviation of ISIs does not depend on cluster properties and cluster arrangement and is robust with respect to cell variability. It is controlled by the global feedback processes in the Ca(2+) signaling pathway (e.g., via IP(3)-3-kinase or endoplasmic reticulum depletion). That relation is essential for pathway function because it ensures frequency encoding despite the randomness of ISIs and determines the maximal spike train information content. Hence, we find a division of tasks between global feedbacks and local cluster properties that guarantees robustness of function while maintaining sensitivity of control of the average ISI.

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Year:  2010        PMID: 21173273      PMCID: PMC3017167          DOI: 10.1073/pnas.1008435108

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  40 in total

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2.  Cooperativity can reduce stochasticity in intracellular calcium dynamics.

Authors:  Kai Wang; Wouter-Jan Rappel; Herbert Levine
Journal:  Phys Biol       Date:  2004-06       Impact factor: 2.583

3.  Molecular communication through stochastic synchronization induced by extracellular fluctuations.

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4.  A variational approach to the stochastic aspects of cellular signal transduction.

Authors:  Yueheng Lan; Peter G Wolynes; Garegin A Papoian
Journal:  J Chem Phys       Date:  2006-09-28       Impact factor: 3.488

5.  Robustness in bacterial chemotaxis.

Authors:  U Alon; M G Surette; N Barkai; S Leibler
Journal:  Nature       Date:  1999-01-14       Impact factor: 49.962

6.  Initiation of IP(3)-mediated Ca(2+) waves in Xenopus oocytes.

Authors:  J Marchant; N Callamaras; I Parker
Journal:  EMBO J       Date:  1999-10-01       Impact factor: 11.598

7.  Cluster formation of inositol 1,4,5-trisphosphate receptor requires its transition to open state.

Authors:  Yoko Tateishi; Mitsuharu Hattori; Tomohiro Nakayama; Miwako Iwai; Hiroko Bannai; Takeshi Nakamura; Takayuki Michikawa; Takafumi Inoue; Katsuhiko Mikoshiba
Journal:  J Biol Chem       Date:  2004-12-06       Impact factor: 5.157

8.  A method for determining the dependence of calcium oscillations on inositol trisphosphate oscillations.

Authors:  J Sneyd; K Tsaneva-Atanasova; V Reznikov; Y Bai; M J Sanderson; D I Yule
Journal:  Proc Natl Acad Sci U S A       Date:  2006-01-30       Impact factor: 11.205

9.  Fundamental limits on the suppression of molecular fluctuations.

Authors:  Ioannis Lestas; Glenn Vinnicombe; Johan Paulsson
Journal:  Nature       Date:  2010-09-09       Impact factor: 49.962

10.  Calcium-dependent clustering of inositol 1,4,5-trisphosphate receptors.

Authors:  B S Wilson; J R Pfeiffer; A J Smith; J M Oliver; J A Oberdorf; R J Wojcikiewicz
Journal:  Mol Biol Cell       Date:  1998-06       Impact factor: 4.138

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  17 in total

1.  Timescales of IP(3)-evoked Ca(2+) spikes emerge from Ca(2+) puffs only at the cellular level.

Authors:  Kevin Thurley; Ian F Smith; Stephen C Tovey; Colin W Taylor; Ian Parker; Martin Falcke
Journal:  Biophys J       Date:  2011-12-07       Impact factor: 4.033

2.  Linking flickering to waves and whole-cell oscillations in a mitochondrial network model.

Authors:  Melissa Nivala; Paavo Korge; Michael Nivala; James N Weiss; Zhilin Qu
Journal:  Biophys J       Date:  2011-11-01       Impact factor: 4.033

3.  Mapping Interpuff Interval Distribution to the Properties of Inositol Trisphosphate Receptors.

Authors:  Pengxing Cao; Martin Falcke; James Sneyd
Journal:  Biophys J       Date:  2017-05-23       Impact factor: 4.033

4.  Irregular Ca(2+) oscillations regulate transcription via cumulative spike duration and spike amplitude.

Authors:  Shanshan Song; Jiansha Li; Liping Zhu; Lei Cai; Qian Xu; Chen Ling; Yuan Su; Qinghua Hu
Journal:  J Biol Chem       Date:  2012-10-15       Impact factor: 5.157

5.  Quantifying the uncertainty of spontaneous Ca2+ oscillations in astrocytes: particulars of Alzheimer's disease.

Authors:  J Riera; R Hatanaka; T Uchida; T Ozaki; R Kawashima
Journal:  Biophys J       Date:  2011-08-03       Impact factor: 4.033

6.  Differential Regulation of Multiple Steps in Inositol 1,4,5-Trisphosphate Signaling by Protein Kinase C Shapes Hormone-stimulated Ca2+ Oscillations.

Authors:  Paula J Bartlett; Walson Metzger; Lawrence D Gaspers; Andrew P Thomas
Journal:  J Biol Chem       Date:  2015-06-15       Impact factor: 5.157

7.  The probability of triggering calcium puffs is linearly related to the number of inositol trisphosphate receptors in a cluster.

Authors:  George D Dickinson; Divya Swaminathan; Ian Parker
Journal:  Biophys J       Date:  2012-04-18       Impact factor: 4.033

8.  Reliable encoding of stimulus intensities within random sequences of intracellular Ca2+ spikes.

Authors:  Kevin Thurley; Stephen C Tovey; Gregor Moenke; Victoria L Prince; Abha Meena; Andrew P Thomas; Alexander Skupin; Colin W Taylor; Martin Falcke
Journal:  Sci Signal       Date:  2014-06-24       Impact factor: 8.192

9.  The timing statistics of spontaneous calcium release in cardiac myocytes.

Authors:  Mesfin Asfaw; Enric Alvarez-Lacalle; Yohannes Shiferaw
Journal:  PLoS One       Date:  2013-05-17       Impact factor: 3.240

10.  Hierarchic stochastic modelling applied to intracellular Ca(2+) signals.

Authors:  Gregor Moenke; Martin Falcke; Keven Thurley
Journal:  PLoS One       Date:  2012-12-27       Impact factor: 3.240

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