Literature DB >> 17900519

Electrostatic interactions in the denatured state ensemble: their effect upon protein folding and protein stability.

Jae-Hyun Cho1, Satoshi Sato, Jia-Cherng Horng, Burcu Anil, Daniel P Raleigh.   

Abstract

It is now recognized that the denatured state ensemble (DSE) of proteins can contain significant amounts of structure, particularly under native conditions. Well-studied examples include small units of hydrogen bonded secondary structure, particularly helices or turns as well as hydrophobic clusters. Other types of interactions are less well characterized and it has often been assumed that electrostatic interactions play at most a minor role in the DSE. However, recent studies have shown that both favorable and unfavorable electrostatic interactions can be formed in the DSE. These can include surprisingly specific non-native interactions that can even persist in the transition state for protein folding. DSE electrostatic interactions can be energetically significant and their modulation either by mutation or by varying solution conditions can have a major impact upon protein stability. pH dependent stability studies have shown that electrostatic interactions can contribute up to 4 kcal mol(-1) to the stability of the DSE.

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Year:  2007        PMID: 17900519      PMCID: PMC2820407          DOI: 10.1016/j.abb.2007.08.004

Source DB:  PubMed          Journal:  Arch Biochem Biophys        ISSN: 0003-9861            Impact factor:   4.013


  47 in total

1.  Increasing protein stability by altering long-range coulombic interactions.

Authors:  G R Grimsley; K L Shaw; L R Fee; R W Alston; B M Huyghues-Despointes; R L Thurlkill; J M Scholtz; C N Pace
Journal:  Protein Sci       Date:  1999-09       Impact factor: 6.725

2.  pKa values and the pH dependent stability of the N-terminal domain of L9 as probes of electrostatic interactions in the denatured state. Differentiation between local and nonlocal interactions.

Authors:  B Kuhlman; D L Luisi; P Young; D P Raleigh
Journal:  Biochemistry       Date:  1999-04-13       Impact factor: 3.162

3.  Direct characterization of the folded, unfolded and urea-denatured states of the C-terminal domain of the ribosomal protein L9.

Authors:  Ying Li; Francis Picart; Daniel P Raleigh
Journal:  J Mol Biol       Date:  2005-04-26       Impact factor: 5.469

4.  Charge-charge interactions in the denatured state influence the folding kinetics of ribonuclease Sa.

Authors:  Jared M Trefethen; C Nick Pace; J Martin Scholtz; David N Brems
Journal:  Protein Sci       Date:  2005-06-03       Impact factor: 6.725

5.  Perturbed pKA-values in the denatured states of proteins.

Authors:  Y J Tan; M Oliveberg; B Davis; A R Fersht
Journal:  J Mol Biol       Date:  1995-12-15       Impact factor: 5.469

6.  NOE data demonstrating a compact unfolded state for an SH3 domain under non-denaturing conditions.

Authors:  Y K Mok; C M Kay; L E Kay; J Forman-Kay
Journal:  J Mol Biol       Date:  1999-06-11       Impact factor: 5.469

7.  Surface point mutations that significantly alter the structure and stability of a protein's denatured state.

Authors:  C K Smith; Z Bu; K S Anderson; J M Sturtevant; D M Engelman; L Regan
Journal:  Protein Sci       Date:  1996-10       Impact factor: 6.725

Review 8.  The denatured state (the other half of the folding equation) and its role in protein stability.

Authors:  D Shortle
Journal:  FASEB J       Date:  1996-01       Impact factor: 5.191

9.  On the pH dependence of protein stability.

Authors:  A S Yang; B Honig
Journal:  J Mol Biol       Date:  1993-05-20       Impact factor: 5.469

10.  Analysis of the pH-dependent folding and stability of histidine point mutants allows characterization of the denatured state and transition state for protein folding.

Authors:  Jia-Cherng Horng; Jae-Hyun Cho; Daniel P Raleigh
Journal:  J Mol Biol       Date:  2005-01-07       Impact factor: 5.469

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  17 in total

1.  Uncovering specific electrostatic interactions in the denatured states of proteins.

Authors:  Jana K Shen
Journal:  Biophys J       Date:  2010-08-04       Impact factor: 4.033

2.  Cooperative formation of native-like tertiary contacts in the ensemble of unfolded states of a four-helix protein.

Authors:  Susanne W Bruun; Vytautas Iesmantavicius; Jens Danielsson; Flemming M Poulsen
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-12       Impact factor: 11.205

3.  Thermally denatured state determines refolding in lipase: mutational analysis.

Authors:  Shoeb Ahmad; Nalam Madhusudhana Rao
Journal:  Protein Sci       Date:  2009-06       Impact factor: 6.725

Review 4.  Protein ionizable groups: pK values and their contribution to protein stability and solubility.

Authors:  C Nick Pace; Gerald R Grimsley; J Martin Scholtz
Journal:  J Biol Chem       Date:  2009-01-21       Impact factor: 5.157

5.  Rational modification of protein stability by targeting surface sites leads to complicated results.

Authors:  Shifeng Xiao; Vadim Patsalo; Bing Shan; Yuan Bi; David F Green; Daniel P Raleigh
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-24       Impact factor: 11.205

6.  Nonnative interactions regulate folding and switching of myristoylated protein.

Authors:  Dalit Shental-Bechor; Martin T J Smith; Duncan Mackenzie; Aron Broom; Amir Marcovitz; Fadila Ghashut; Chris Go; Fernando Bralha; Elizabeth M Meiering; Yaakov Levy
Journal:  Proc Natl Acad Sci U S A       Date:  2012-07-30       Impact factor: 11.205

7.  Energetically significant networks of coupled interactions within an unfolded protein.

Authors:  Jae-Hyun Cho; Wenli Meng; Satoshi Sato; Eun Young Kim; Hermann Schindelin; Daniel P Raleigh
Journal:  Proc Natl Acad Sci U S A       Date:  2014-08-06       Impact factor: 11.205

8.  Effect of an Imposed Contact on Secondary Structure in the Denatured State of Yeast Iso-1-cytochrome c.

Authors:  Travis A Danielson; Jessica M Stine; Tanveer A Dar; Klara Briknarova; Bruce E Bowler
Journal:  Biochemistry       Date:  2017-12-08       Impact factor: 3.162

9.  Helical Propensity Affects the Conformational Properties of the Denatured State of Cytochrome c'.

Authors:  Travis A Danielson; Bruce E Bowler
Journal:  Biophys J       Date:  2018-01-23       Impact factor: 4.033

10.  Characterization of the unfolded state of repeat proteins.

Authors:  Amit Mor; Gilad Haran; Yaakov Levy
Journal:  HFSP J       Date:  2008-11-12
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