Literature DB >> 22500764

Highly perturbed pKa values in the unfolded state of hen egg white lysozyme.

John Bradley1, Fergal O'Meara, Damien Farrell, Jens Erik Nielsen.   

Abstract

The majority of pK(a) values in protein unfolded states are close to the amino acid model pK(a) values, thus reflecting the weak intramolecular interactions present in the unfolded ensemble of most proteins. We have carried out thermal denaturation measurements on the WT and eight mutants of HEWL from pH 1.5 to pH 11.0 to examine the unfolded state pK(a) values and the pH dependence of protein stability for this enzyme. The availability of accurate pK(a) values for the folded state of HEWL and separate measurements of mutant-induced effects on the folded state pK(a) values, allows us to estimate the pK(a) values of seven acidic residues in the unfolded state of HEWL. Asp-48 and Asp-66 display pK(a) values of 2.9 and 3.1 in our analysis, thus representing the most depressed unfolded state pK(a) values observed to date. We observe a strong correlation between the folded state pK(a) values and the unfolded state pK(a) values of HEWL, thus suggesting that the unfolded state of HEWL possesses a large degree of native state characteristics.
Copyright © 2012 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 22500764      PMCID: PMC3318136          DOI: 10.1016/j.bpj.2012.02.048

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  42 in total

1.  Realistic modeling of the denatured states of proteins allows accurate calculations of the pH dependence of protein stability.

Authors:  A H Elcock
Journal:  J Mol Biol       Date:  1999-12-10       Impact factor: 5.469

2.  The folding of hen lysozyme involves partially structured intermediates and multiple pathways.

Authors:  S E Radford; C M Dobson; P A Evans
Journal:  Nature       Date:  1992-07-23       Impact factor: 49.962

3.  Perturbed pKA-values in the denatured states of proteins.

Authors:  Y J Tan; M Oliveberg; B Davis; A R Fersht
Journal:  J Mol Biol       Date:  1995-12-15       Impact factor: 5.469

4.  Thermodynamics of the denaturation of lysozyme by guanidine hydrochloride. I. Depdendence on pH at 25 degrees.

Authors:  K C Aune; C Tanford
Journal:  Biochemistry       Date:  1969-11       Impact factor: 3.162

5.  Hydrogen bonds and the pH dependence of ovomucoid third domain stability.

Authors:  L Swint-Kruse; A D Robertson
Journal:  Biochemistry       Date:  1995-04-11       Impact factor: 3.162

6.  On the pH dependence of protein stability.

Authors:  A S Yang; B Honig
Journal:  J Mol Biol       Date:  1993-05-20       Impact factor: 5.469

7.  Structural origins of pH and ionic strength effects on protein stability. Acid denaturation of sperm whale apomyoglobin.

Authors:  A S Yang; B Honig
Journal:  J Mol Biol       Date:  1994-04-15       Impact factor: 5.469

8.  Measurement of the individual pKa values of acidic residues of hen and turkey lysozymes by two-dimensional 1H NMR.

Authors:  K Bartik; C Redfield; C M Dobson
Journal:  Biophys J       Date:  1994-04       Impact factor: 4.033

9.  Analysis of electrostatic interactions in the denatured state ensemble of the N-terminal domain of L9 under native conditions.

Authors:  Wenli Meng; Daniel P Raleigh
Journal:  Proteins       Date:  2011-09-13

10.  pKA values of carboxyl groups in the native and denatured states of barnase: the pKA values of the denatured state are on average 0.4 units lower than those of model compounds.

Authors:  M Oliveberg; V L Arcus; A R Fersht
Journal:  Biochemistry       Date:  1995-07-25       Impact factor: 3.162

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  3 in total

Review 1.  Electrostatic Interactions in Protein Structure, Folding, Binding, and Condensation.

Authors:  Huan-Xiang Zhou; Xiaodong Pang
Journal:  Chem Rev       Date:  2018-01-10       Impact factor: 60.622

2.  Local and global anatomy of antibody-protein antigen recognition.

Authors:  Meryl Wang; David Zhu; Jianwei Zhu; Ruth Nussinov; Buyong Ma
Journal:  J Mol Recognit       Date:  2017-12-08       Impact factor: 2.137

3.  Atomistic basis of opening and conduction in mammalian inward rectifier potassium (Kir2.2) channels.

Authors:  Eva-Maria Zangerl-Plessl; Sun-Joo Lee; Grigory Maksaev; Harald Bernsteiner; Feifei Ren; Peng Yuan; Anna Stary-Weinzinger; Colin G Nichols
Journal:  J Gen Physiol       Date:  2020-01-06       Impact factor: 4.000

  3 in total

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