Literature DB >> 16984151

Protein side-chain dynamics observed by solution- and solid-state NMR: comparative analysis of methyl 2H relaxation data.

Bernd Reif1, Yi Xue, Vipin Agarwal, Maria S Pavlova, Maggy Hologne, Anne Diehl, Yaroslav E Ryabov, Nikolai R Skrynnikov.   

Abstract

Rapid advances in solid-state MAS NMR made it possible to probe protein dynamics on a per-residue basis, similar to solution experiments. In this work we compare methyl 2H relaxation rates measured in the solid and liquid samples of alpha-spectrin SH3 domain. The solution data are treated using a model-free approach to separate the contributions from the overall molecular tumbling and fast internal motion. The latter part forms the basis for comparison with the solid-state data. Although the accuracy of solid-state measurements is limited by deuterium spin diffusion, the results suggest a significant similarity between methyl dynamics in the two samples. This is a potentially important observation, preparing the ground for combined analysis of the dynamics data by solid- and solution-state NMR.

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Year:  2006        PMID: 16984151     DOI: 10.1021/ja062808a

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  14 in total

1.  Proton detection for signal enhancement in solid-state NMR experiments on mobile species in membrane proteins.

Authors:  Meaghan E Ward; Emily Ritz; Mumdooh A M Ahmed; Vladimir V Bamm; George Harauz; Leonid S Brown; Vladimir Ladizhansky
Journal:  J Biomol NMR       Date:  2015-10-22       Impact factor: 2.835

2.  Quantitative analysis of backbone motion in proteins using MAS solid-state NMR spectroscopy.

Authors:  Veniamin Chevelkov; Uwe Fink; Bernd Reif
Journal:  J Biomol NMR       Date:  2009-07-24       Impact factor: 2.835

3.  Biocatalyst activity in nonaqueous environments correlates with centisecond-range protein motions.

Authors:  Ross K Eppler; Elton P Hudson; Shannon D Chase; Jonathan S Dordick; Jeffrey A Reimer; Douglas S Clark
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-07       Impact factor: 11.205

4.  Structure-based prediction of methyl chemical shifts in proteins.

Authors:  Aleksandr B Sahakyan; Wim F Vranken; Andrea Cavalli; Michele Vendruscolo
Journal:  J Biomol NMR       Date:  2011-07-12       Impact factor: 2.835

5.  Determination of methyl order parameters using solid state NMR under off magic angle spinning.

Authors:  Kai Xue; Salvatore Mamone; Benita Koch; Riddhiman Sarkar; Bernd Reif
Journal:  J Biomol NMR       Date:  2019-08-12       Impact factor: 2.835

6.  Sum frequency generation and solid-state NMR study of the structure, orientation, and dynamics of polystyrene-adsorbed peptides.

Authors:  Tobias Weidner; Nicholas F Breen; Kun Li; Gary P Drobny; David G Castner
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-13       Impact factor: 11.205

7.  Integrated description of protein dynamics from room-temperature X-ray crystallography and NMR.

Authors:  R Bryn Fenwick; Henry van den Bedem; James S Fraser; Peter E Wright
Journal:  Proc Natl Acad Sci U S A       Date:  2014-01-13       Impact factor: 11.205

8.  Accessing ns-micros side chain dynamics in ubiquitin with methyl RDCs.

Authors:  Christophe Farès; Nils-Alexander Lakomek; Korvin F A Walter; Benedikt T C Frank; Jens Meiler; Stefan Becker; Christian Griesinger
Journal:  J Biomol NMR       Date:  2009-08-04       Impact factor: 2.835

9.  Dynamics of reassembled thioredoxin studied by magic angle spinning NMR: snapshots from different time scales.

Authors:  Jun Yang; Maria Luisa Tasayco; Tatyana Polenova
Journal:  J Am Chem Soc       Date:  2009-09-30       Impact factor: 15.419

10.  Detection of nanosecond time scale side-chain jumps in a protein dissolved in water/glycerol solvent.

Authors:  Jun Xu; Yi Xue; Nikolai R Skrynnikov
Journal:  J Biomol NMR       Date:  2009-07-07       Impact factor: 2.835

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