Literature DB >> 28707382

Neutron crystallographic studies of T4 lysozyme at cryogenic temperature.

Le Li1, Shantanu Shukla1,2, Flora Meilleur1,3, Robert F Standaert4, Josh Pierce1, Dean A A Myles1,2, Matthew J Cuneo1.   

Abstract

Bacteriophage T4 lysozyme (T4L) has been used as a paradigm for seminal biophysical studies on protein structure, dynamics, and stability. Approximately 700 mutants of this protein and their respective complexes have been characterized by X-ray crystallography; however, despite the high resolution diffraction limits attained in several studies, no hydrogen atoms were reported being visualized in the electron density maps. To address this, a 2.2 Å-resolution neutron data set was collected at 80 K from a crystal of perdeuterated T4L pseudo-wild type. We describe a near complete atomic structure of T4L, which includes the positions of 1737 hydrogen atoms determined by neutron crystallography. The cryogenic neutron model reveals explicit detail of the hydrogen bonding interactions in the protein, in addition to the protonation states of several important residues.
© 2017 The Protein Society.

Entities:  

Keywords:  T4-lysozyme; X-ray; hydrogen; neutron; structure

Mesh:

Substances:

Year:  2017        PMID: 28707382      PMCID: PMC5606543          DOI: 10.1002/pro.3231

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  21 in total

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9.  Towards automated crystallographic structure refinement with phenix.refine.

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2.  Creation of Cross-Linked Crystals With Intermolecular Disulfide Bonds Connecting Symmetry-Related Molecules Allows Retention of Tertiary Structure in Different Solvent Conditions.

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3.  Preliminary results of neutron and X-ray diffraction data collection on a lytic polysaccharide monooxygenase under reduced and acidic conditions.

Authors:  Gabriela C Schröder; William B O'Dell; Paul D Swartz; Flora Meilleur
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Review 5.  Evaluation of models determined by neutron diffraction and proposed improvements to their validation and deposition.

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  7 in total

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