Literature DB >> 24390406

Improved NMR experiments with ¹³C-isotropic mixing for assignment of aromatic and aliphatic side chains in labeled proteins.

Helena Kovacs1, Alvar Gossert.   

Abstract

Three improved ¹³C-spinlock experiments for side chain assignments of isotope labelled proteins in liquid state are presented. These are based on wide bandwidth spinlock techniques that have become possible with contemporary cryogenic probes. The first application, the H(C(ali)C(aro))H-TOCSY, is an HCCH-TOCSY in which all CHn moieties of a protein are detected in a single experiment, including the aromatic ones. This enables unambiguous assignment of aromatic and aliphatic amino acids in a single, highly sensitive experiment. In the second application, the ¹³C-detected C(all)-TOCSY, magnetization transfer comprises all carbons--aliphatic, aromatic as well as the carbonyl carbons--making the complete carbon assignment possible using one spectrum only. Thirdly, the frequently used HC(CCO)NH experiment was redesigned by replacing the long C-carbonyl refocused INEPT transfer step by direct ¹³C-¹³C-TOCSY magnetization transfer from side chain carbons to the backbone carbonyls. The resulting HC(CCO)NH experiment minimizes relaxation losses because it is shorter and represents a more sensitive alternative particularly for larger proteins. The performance of the experiments is demonstrated on isotope labeled proteins up to the size of 43 kDa.

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Year:  2014        PMID: 24390406     DOI: 10.1007/s10858-013-9808-9

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  34 in total

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Authors:  Andrew E Bennett; John D Gross; Gerhard Wagner
Journal:  J Magn Reson       Date:  2003-11       Impact factor: 2.229

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Authors:  Alexander Eletsky; Osvaldo Moreira; Helena Kovacs; Konstantin Pervushin
Journal:  J Biomol NMR       Date:  2003-06       Impact factor: 2.835

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Authors:  Wolfgang Peti; James Norcross; Gary Eldridge; Mark O'Neil-Johnson
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4.  Performance of cryogenic probes as a function of ionic strength and sample tube geometry.

Authors:  Markus W Voehler; Galen Collier; John K Young; Michael P Stone; Markus W Germann
Journal:  J Magn Reson       Date:  2006-09-01       Impact factor: 2.229

5.  PLUSH TACSY: Homonuclear planar TACSY with two-band selective shaped pulses applied to C(α),C' transfer and C (β),C (aromatic) correlations.

Authors:  T Carlomagno; M Maurer; M Sattler; M G Schwendinger; S J Glaser; C Griesinger
Journal:  J Biomol NMR       Date:  1996-09       Impact factor: 2.835

6.  13C-direct detected NMR experiments for the sequential J-based resonance assignment of RNA oligonucleotides.

Authors:  Christian Richter; Helena Kovacs; Janina Buck; Anna Wacker; Boris Fürtig; Wolfgang Bermel; Harald Schwalbe
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7.  Improved pulse sequences for sequence specific assignment of aromatic proton resonances in proteins.

Authors:  Frank Löhr; Robert Hänsel; Vladimir V Rogov; Volker Dötsch
Journal:  J Biomol NMR       Date:  2007-01-20       Impact factor: 2.835

8.  Pulse design for broadband correlation NMR spectroscopy by multi-rotating frames.

Authors:  Paul Coote; Haribabu Arthanari; Tsyr-Yan Yu; Amarnath Natarajan; Gerhard Wagner; Navin Khaneja
Journal:  J Biomol NMR       Date:  2013-02-19       Impact factor: 2.835

9.  Side chain and backbone assignments in isotopically labeled proteins from two heteronuclear triple resonance experiments.

Authors:  T M Logan; E T Olejniczak; R X Xu; S W Fesik
Journal:  FEBS Lett       Date:  1992-12-21       Impact factor: 4.124

10.  13C direct detection experiments on the paramagnetic oxidized monomeric copper, zinc superoxide dismutase.

Authors:  Wolfgang Bermel; Ivano Bertini; Isabella C Felli; Rainer Kümmerle; Roberta Pierattelli
Journal:  J Am Chem Soc       Date:  2003-12-31       Impact factor: 15.419

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3.  Analytical optimization of active bandwidth and quality factor for TOCSY experiments in NMR spectroscopy.

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Journal:  PLoS One       Date:  2017-04-06       Impact factor: 3.240

5.  Structure of the PUB Domain from Ubiquitin Regulatory X Domain Protein 1 (UBXD1) and Its Interaction with the p97 AAA+ ATPase.

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6.  The molecular basis of FimT-mediated DNA uptake during bacterial natural transformation.

Authors:  Stefanie Holz; Matthew J M Stedman; Sebastian A G Braus; Francesca L Short; Alvar D Gossert; Manuela K Hospenthal
Journal:  Nat Commun       Date:  2022-03-04       Impact factor: 17.694

  6 in total

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