Literature DB >> 16935245

In vitro evolution of proteins.

Tomoaki Matsuura1, Tetsuya Yomo.   

Abstract

Consecutive rounds of diversification and selection of the fittest is believed to be the main driving force for the evolution of life. For the evolution of life to proceed, all living cells are surrounded by a lipid bilayer that separates their own genes from the external environment and from those of other organisms. In this way, the genetic information of an individual is replicated on the basis of their phenotype; thus the enrichment of the fittest will occur. Hence, evolution is based on linkage between genotype and phenotype owing to the surrounding of the genetic material with a barrier. The linkage between genotype and phenotype is also known to be essential for the directed evolution of proteins. Indeed, systems for molecular evolution, including phage display, ribosome display, and in vitro compartmentalization, all satisfy this requirement in different ways. These systems have been shown to be powerful tools for high-throughput screening for the functions of proteins, screening as many as <10(12) molecules in 1 d. These selection systems in combination with various gene libraries yield proteins with improved or altered biophysical properties, and may even allow the generation of proteins with novel functions.

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Year:  2006        PMID: 16935245     DOI: 10.1263/jbb.101.449

Source DB:  PubMed          Journal:  J Biosci Bioeng        ISSN: 1347-4421            Impact factor:   2.894


  13 in total

Review 1.  Technologies of directed protein evolution in vivo.

Authors:  Artem Blagodatski; Vladimir L Katanaev
Journal:  Cell Mol Life Sci       Date:  2010-12-29       Impact factor: 9.261

Review 2.  The Toolbox for Modified Aptamers.

Authors:  Sergey A Lapa; Alexander V Chudinov; Edward N Timofeev
Journal:  Mol Biotechnol       Date:  2016-02       Impact factor: 2.695

3.  In vitro evolution of α-hemolysin using a liposome display.

Authors:  Satoshi Fujii; Tomoaki Matsuura; Takeshi Sunami; Yasuaki Kazuta; Tetsuya Yomo
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-30       Impact factor: 11.205

4.  A high-throughput cellulase screening system based on droplet microfluidics.

Authors:  Raluca Ostafe; Radivoje Prodanovic; W Lloyd Ung; David A Weitz; Rainer Fischer
Journal:  Biomicrofluidics       Date:  2014-07-02       Impact factor: 2.800

Review 5.  The developing toolkit of continuous directed evolution.

Authors:  Mary S Morrison; Christopher J Podracky; David R Liu
Journal:  Nat Chem Biol       Date:  2020-05-22       Impact factor: 15.040

Review 6.  Protein and genome evolution in Mammalian cells for biotechnology applications.

Authors:  Brian S Majors; Gisela G Chiang; Michael J Betenbaugh
Journal:  Mol Biotechnol       Date:  2009-04-15       Impact factor: 2.695

Review 7.  Applications of flow cytometry in environmental microbiology and biotechnology.

Authors:  Peter L Bergquist; Elizabeth M Hardiman; Belinda C Ferrari; Tristrom Winsley
Journal:  Extremophiles       Date:  2009-03-20       Impact factor: 2.395

8.  mRNA display selection of an optimized MDM2-binding peptide that potently inhibits MDM2-p53 interaction.

Authors:  Hirokazu Shiheido; Hideaki Takashima; Nobuhide Doi; Hiroshi Yanagawa
Journal:  PLoS One       Date:  2011-03-15       Impact factor: 3.240

9.  Quantifying epistatic interactions among the components constituting the protein translation system.

Authors:  Tomoaki Matsuura; Yasuaki Kazuta; Takuyo Aita; Jiro Adachi; Tetsuya Yomo
Journal:  Mol Syst Biol       Date:  2009-08-18       Impact factor: 11.429

10.  Protein evolution by hypermutation and selection in the B cell line DT40.

Authors:  Hiroshi Arakawa; Hiroaki Kudo; Vera Batrak; Randolph B Caldwell; Michael A Rieger; Joachim W Ellwart; Jean-Marie Buerstedde
Journal:  Nucleic Acids Res       Date:  2007-12-11       Impact factor: 16.971

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