Literature DB >> 25379082

A high-throughput cellulase screening system based on droplet microfluidics.

Raluca Ostafe, Radivoje Prodanovic, W Lloyd Ung1, David A Weitz1, Rainer Fischer.   

Abstract

A new ultra-high-throughput screening assay for the detection of cellulase activity was developed based on microfluidic sorting. Cellulase activity is detected using a series of coupled enzymes leading to the formation of a fluorescent product that can be detected on a chip. Using this method, we have achieved up to 300-fold enrichments of the active population of cells and greater than 90% purity after just one sorting round. In addition, we proved that we can sort the cellulase-expressing cells from mixtures containing less than 1% active cells.

Year:  2014        PMID: 25379082      PMCID: PMC4189127          DOI: 10.1063/1.4886771

Source DB:  PubMed          Journal:  Biomicrofluidics        ISSN: 1932-1058            Impact factor:   2.800


  13 in total

1.  Flow cytometry: a new method to investigate the properties of water-in-oil-in-water emulsions.

Authors:  Mingtan Hai; Kalia Bernath; Dan Tawfik; Shlomo Magdassi
Journal:  Langmuir       Date:  2004-03-16       Impact factor: 3.882

Review 2.  In vitro evolution of proteins.

Authors:  Tomoaki Matsuura; Tetsuya Yomo
Journal:  J Biosci Bioeng       Date:  2006-06       Impact factor: 2.894

3.  Flow cytometry-based ultra-high-throughput screening assay for cellulase activity.

Authors:  Raluca Ostafe; Radivoje Prodanovic; Ulrich Commandeur; Rainer Fischer
Journal:  Anal Biochem       Date:  2012-11-09       Impact factor: 3.365

4.  Vanadium bromoperoxidase-coupled fluorescent assay for flow cytometry sorting of glucose oxidase gene libraries in double emulsions.

Authors:  Radivoje Prodanovic; Raluca Ostafe; Milan Blanusa; Ulrich Schwaneberg
Journal:  Anal Bioanal Chem       Date:  2012-07-19       Impact factor: 4.142

5.  High-throughput screening of enzyme libraries: thiolactonases evolved by fluorescence-activated sorting of single cells in emulsion compartments.

Authors:  Amir Aharoni; Gil Amitai; Kalia Bernath; Shlomo Magdassi; Dan S Tawfik
Journal:  Chem Biol       Date:  2005-12

6.  Biocompatible surfactants for water-in-fluorocarbon emulsions.

Authors:  C Holtze; A C Rowat; J J Agresti; J B Hutchison; F E Angilè; C H J Schmitz; S Köster; H Duan; K J Humphry; R A Scanga; J S Johnson; D Pisignano; D A Weitz
Journal:  Lab Chip       Date:  2008-09-02       Impact factor: 6.799

7.  Characterization of the catalytic domains of Trichoderma reesei endoglucanase I, II, and III, expressed in Escherichia coli.

Authors:  Hikaru Nakazawa; Katsunori Okada; Ryota Kobayashi; Tetsuya Kubota; Tomoko Onodera; Nobuhiro Ochiai; Naoki Omata; Wataru Ogasawara; Hirofumi Okada; Yasushi Morikawa
Journal:  Appl Microbiol Biotechnol       Date:  2008-09-02       Impact factor: 4.813

8.  Investigation on the release of fluorescent markers from w/o/w emulsions by fluorescence-activated cell sorter.

Authors:  Mingtan Hai; Shlomo Magdassi
Journal:  J Control Release       Date:  2004-05-18       Impact factor: 9.776

9.  Man-made cell-like compartments for molecular evolution.

Authors:  D S Tawfik; A D Griffiths
Journal:  Nat Biotechnol       Date:  1998-07       Impact factor: 54.908

10.  Microbial cellulases and their industrial applications.

Authors:  Ramesh Chander Kuhad; Rishi Gupta; Ajay Singh
Journal:  Enzyme Res       Date:  2011-09-07
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  12 in total

Review 1.  Methods for the directed evolution of proteins.

Authors:  Michael S Packer; David R Liu
Journal:  Nat Rev Genet       Date:  2015-06-09       Impact factor: 53.242

Review 2.  Discovery in Droplets.

Authors:  Alexander K Price; Brian M Paegel
Journal:  Anal Chem       Date:  2015-11-20       Impact factor: 6.986

3.  Ultrahigh-Throughput Detection of Enzymatic Alcohol Dehydrogenase Activity in Microfluidic Droplets with a Direct Fluorogenic Assay.

Authors:  Miriam Klaus; Paul Jannis Zurek; Tomasz S Kaminski; Ahir Pushpanath; Katharina Neufeld; Florian Hollfelder
Journal:  Chembiochem       Date:  2021-10-13       Impact factor: 3.461

4.  High-throughput screening of filamentous fungi using nanoliter-range droplet-based microfluidics.

Authors:  Thomas Beneyton; I Putu Mahendra Wijaya; Prexilia Postros; Majdi Najah; Pascal Leblond; Angélique Couvent; Estelle Mayot; Andrew D Griffiths; Antoine Drevelle
Journal:  Sci Rep       Date:  2016-06-07       Impact factor: 4.379

Review 5.  Microfluidics for Antibiotic Susceptibility and Toxicity Testing.

Authors:  Jing Dai; Morgan Hamon; Sachin Jambovane
Journal:  Bioengineering (Basel)       Date:  2016-10-09

6.  A High-Throughput Screening System Based on Droplet Microfluidics for Glucose Oxidase Gene Libraries.

Authors:  Radivoje Prodanović; W Lloyd Ung; Karla Ilić Đurđić; Rainer Fischer; David A Weitz; Raluca Ostafe
Journal:  Molecules       Date:  2020-05-22       Impact factor: 4.411

Review 7.  Directed Evolution in Drops: Molecular Aspects and Applications.

Authors:  Aitor Manteca; Alejandra Gadea; David Van Assche; Pauline Cossard; Mélanie Gillard-Bocquet; Thomas Beneyton; C Axel Innis; Jean-Christophe Baret
Journal:  ACS Synth Biol       Date:  2021-10-22       Impact factor: 5.110

Review 8.  Consolidated Bioprocessing: Synthetic Biology Routes to Fuels and Fine Chemicals.

Authors:  Alec Banner; Helen S Toogood; Nigel S Scrutton
Journal:  Microorganisms       Date:  2021-05-18

Review 9.  High-Throughput Screening in Protein Engineering: Recent Advances and Future Perspectives.

Authors:  Magdalena Wójcik; Aline Telzerow; Wim J Quax; Ykelien L Boersma
Journal:  Int J Mol Sci       Date:  2015-10-20       Impact factor: 5.923

Review 10.  Droplet Microfluidics and Directed Evolution of Enzymes: An Intertwined Journey.

Authors:  Ariane Stucki; Jaicy Vallapurackal; Thomas R Ward; Petra S Dittrich
Journal:  Angew Chem Int Ed Engl       Date:  2021-07-16       Impact factor: 15.336

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