Literature DB >> 16922496

The "bridging" aspartate 178 in phthalate dioxygenase facilitates interactions between the Rieske center and the iron(II)--mononuclear center.

Michael Tarasev1, Alex Pinto, Duke Kim, Sean J Elliott, David P Ballou.   

Abstract

Phthalate dioxygenase (PDO) and its reductase are parts of a two-component Rieske dioxygenase system that initiates the aerobic breakdown of phthalate by forming cis-4,5-dihydro-4,5-dihydroxyphthalate (DHD). Aspartate D178 in PDO, located near its ferrous mononuclear center, is highly conserved among Rieske dioxygenases. The analogous aspartate has been implicated in electron transfer between the mononuclear iron and Rieske center in naphthalene dioxygenase [Parales et al. (1999) J. Bacteriol. 181, 1831-1837] and in substrate binding and oxygen reactivity in anthranilate dioxygenase [Beharry et al. (2003) Biochemistry 42, 13625-13636]. The effects of substituting D178 in PDO with alanine or asparagine on the reactivity of the Rieske centers, phthalate hydroxylation, and coupling of Rieske center oxidation to DHD formation were studied previously [Pinto et al. (2006) Biochemistry 45, 9032-9041]. This work describes effects that D178N and D178A substitutions have on the interactions between the Rieske and mononuclear centers in PDO. The mutations affected protonation of the Rieske center histidine and conformation of subunits within the PDO multimer to create a more open structure with more solvent-accessible Rieske centers. When the Rieske centers in PDO were oxidized, D178N and D178A substitutions disrupted communication between the Rieske and Fe-mononuclear centers. This was shown by the lack of perturbations of the UV-vis spectra on phthalate binding to the D178N and D178A variants, as opposed to that observed in WT PDO. However, when the Rieske center was in the reduced state, communication between the centers was not disrupted. Phthalate binding similarly affected the rates of oxidation of the reduced Rieske center in both WT and mutant PDO. Nitric oxide binding at the Fe(II)-mononuclear center, as detected by EPR spectrometry of the Fe(II) nitrosyl complex, was regulated by the redox state of the Rieske center. When the Rieske center was oxidized in either WT or D178N PDO, NO bound to the mononuclear iron in the presence or absence of phthalate. However, when the Rieske center was reduced, NO bound only when phthalate was present. These findings are discussed in terms of the "communication functions" performed by the bridging Asp-178.

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Year:  2006        PMID: 16922496      PMCID: PMC2546612          DOI: 10.1021/bi060219b

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  26 in total

1.  The reduction of the Rieske iron-sulfur cluster in naphthalene dioxygenase by X-rays.

Authors:  A Karlsson; J V Parales; R E Parales; D T Gibson; H Eklund; S Ramaswamy
Journal:  J Inorg Biochem       Date:  2000-01-15       Impact factor: 4.155

2.  Crystal structure of naphthalene dioxygenase: side-on binding of dioxygen to iron.

Authors:  Andreas Karlsson; Juanito V Parales; Rebecca E Parales; David T Gibson; Hans Eklund; S Ramaswamy
Journal:  Science       Date:  2003-02-14       Impact factor: 47.728

3.  Modulation of substrate binding to naphthalene 1,2-dioxygenase by rieske cluster reduction/oxidation.

Authors:  Tran-Chin Yang; Matt D Wolfe; Matthew B Neibergall; Yasmina Mekmouche; John D Lipscomb; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2003-02-26       Impact factor: 15.419

4.  Benzoate 1,2-dioxygenase from Pseudomonas putida: single turnover kinetics and regulation of a two-component Rieske dioxygenase.

Authors:  Matt D Wolfe; Daniel J Altier; Audria Stubna; Codrina V Popescu; Eckard Münck; John D Lipscomb
Journal:  Biochemistry       Date:  2002-07-30       Impact factor: 3.162

5.  Substrate binding to NO-ferro-naphthalene 1,2-dioxygenase studied by high-resolution Q-band pulsed 2H-ENDOR spectroscopy.

Authors:  Tran Chin Yang; Matt D Wolfe; Matthew B Neibergall; Yasmina Mekmouche; John D Lipscomb; Brian M Hoffman
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7.  Rates of the phthalate dioxygenase reaction with oxygen are dramatically increased by interactions with phthalate and phthalate oxygenase reductase.

Authors:  Michael Tarasev; Frank Rhames; David P Ballou
Journal:  Biochemistry       Date:  2004-10-12       Impact factor: 3.162

8.  EPR and Mössbauer studies of protocatechuate 4,5-dioxygenase. Characterization of a new Fe2+ environment.

Authors:  D M Arciero; J D Lipscomb; B H Huynh; T A Kent; E Münck
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9.  Histidine ligand protonation and redox potential in the rieske dioxygenases: role of a conserved aspartate in anthranilate 1,2-dioxygenase.

Authors:  Zanna M Beharry; D Matthew Eby; Eric D Coulter; Rathinam Viswanathan; Ellen L Neidle; Robert S Phillips; Donald M Kurtz
Journal:  Biochemistry       Date:  2003-11-25       Impact factor: 3.162

10.  Substitutions of the "bridging" aspartate 178 result in profound changes in the reactivity of the Rieske center of phthalate dioxygenase.

Authors:  Alex Pinto; Michael Tarasev; David P Ballou
Journal:  Biochemistry       Date:  2006-08-01       Impact factor: 3.162

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  13 in total

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6.  Characterization of 3-ketosteroid 9{alpha}-hydroxylase, a Rieske oxygenase in the cholesterol degradation pathway of Mycobacterium tuberculosis.

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8.  Carnitine metabolism in the human gut: characterization of the two-component carnitine monooxygenase CntAB from Acinetobacter baumannii.

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9.  Distal end of 105-125 loop--a putative reductase binding domain of phthalate dioxygenase.

Authors:  Michael Tarasev; Sailaja Pullela; David P Ballou
Journal:  Arch Biochem Biophys       Date:  2009-05-22       Impact factor: 4.013

10.  Structural insight into the substrate- and dioxygen-binding manner in the catalytic cycle of rieske nonheme iron oxygenase system, carbazole 1,9a-dioxygenase.

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