Literature DB >> 16866348

Substitutions of the "bridging" aspartate 178 result in profound changes in the reactivity of the Rieske center of phthalate dioxygenase.

Alex Pinto1, Michael Tarasev, David P Ballou.   

Abstract

Phthalate dioxygenase (PDO) and its reductase (PDR) are parts of a two-component Rieske oxygenase system that initiates the aerobic breakdown of phthalate by forming cis-4,5-dihydro-4,5-dihydroxyphthalate. Aspartate D178 in PDO, which lies between the Rieske [2Fe-2S] center of one subunit and the mononuclear center of the adjacent subunit, is highly conserved among the Rieske dioxygenases. The analogous aspartate has been implicated in electron transfer in naphthalene dioxygenase and in substrate binding and oxygen reactivity in anthranilate dioxygenase. Substitution of D178 with alanine or asparagine in PDO resulted in proteins with significantly increased Fe(II) dissociation constants. The rates of oxidation of the reduced Rieske centers in D178A and D178N were decreased by more than 10(4)-fold; only part of the loss of activity can be attributed to depletion of iron from the mononuclear centers. Reduction of PDO by reduced PDR was also slower in the D178A and D178N variants. Observed decreases in turnover rates of D178A and D178N compared to that of wild-type (WT) PDO (>10(2)-fold) can be ascribed to the cumulative effect of the low intrinsic iron content of the D178A and D178N mutants and the combination of the decreased rates of Rieske center reduction and oxidation. The coupling of dihydrodiol formation approached 100% in WT PDO but was only approximately 16% in D178A and approximately 7% in D178N. In single-turnover experiments, very small amounts of DHD were produced by D178A and D178N "as purified". The presence of saturating amounts of ferrous ion improved coupling to nearly 100% for the D178N variant but only slightly improved coupling for D178A. Thus, although hydroxylation is still possible in the variants, the reactions are largely uncoupled due to slow intramolecular electron transfer rates and the apparent weak binding of iron at the mononuclear centers.

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Year:  2006        PMID: 16866348     DOI: 10.1021/bi060216z

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  13 in total

1.  Similar enzymes, different structures: phthalate dioxygenase is an alpha3alpha3 stacked hexamer, not an alpha3beta3 trimer like "normal" Rieske oxygenases.

Authors:  Michael Tarasev; Catherine S Kaddis; Sheng Yin; Joseph A Loo; John Burgner; David P Ballou
Journal:  Arch Biochem Biophys       Date:  2007-07-14       Impact factor: 4.013

2.  Rate-Determining Attack on Substrate Precedes Rieske Cluster Oxidation during Cis-Dihydroxylation by Benzoate Dioxygenase.

Authors:  Brent S Rivard; Melanie S Rogers; Daniel J Marell; Matthew B Neibergall; Sarmistha Chakrabarty; Christopher J Cramer; John D Lipscomb
Journal:  Biochemistry       Date:  2015-07-21       Impact factor: 3.162

Review 3.  Metalloproteins containing cytochrome, iron-sulfur, or copper redox centers.

Authors:  Jing Liu; Saumen Chakraborty; Parisa Hosseinzadeh; Yang Yu; Shiliang Tian; Igor Petrik; Ambika Bhagi; Yi Lu
Journal:  Chem Rev       Date:  2014-04-23       Impact factor: 60.622

4.  Glycine Betaine Monooxygenase, an Unusual Rieske-Type Oxygenase System, Catalyzes the Oxidative N-Demethylation of Glycine Betaine in Chromohalobacter salexigens DSM 3043.

Authors:  Ya-Hui Shao; Li-Zhong Guo; Yu-Qing Zhang; Hao Yu; Bai-Suo Zhao; Hai-Qiang Pang; Wei-Dong Lu
Journal:  Appl Environ Microbiol       Date:  2018-06-18       Impact factor: 4.792

5.  The "bridging" aspartate 178 in phthalate dioxygenase facilitates interactions between the Rieske center and the iron(II)--mononuclear center.

Authors:  Michael Tarasev; Alex Pinto; Duke Kim; Sean J Elliott; David P Ballou
Journal:  Biochemistry       Date:  2006-08-29       Impact factor: 3.162

6.  Characterization of 3-ketosteroid 9{alpha}-hydroxylase, a Rieske oxygenase in the cholesterol degradation pathway of Mycobacterium tuberculosis.

Authors:  Jenna K Capyk; Igor D'Angelo; Natalie C Strynadka; Lindsay D Eltis
Journal:  J Biol Chem       Date:  2009-02-20       Impact factor: 5.157

7.  Crystal structure of dicamba monooxygenase: a Rieske nonheme oxygenase that catalyzes oxidative demethylation.

Authors:  Razvan Dumitru; Wen Zhi Jiang; Donald P Weeks; Mark A Wilson
Journal:  J Mol Biol       Date:  2009-07-15       Impact factor: 5.469

8.  Hydrogen peroxide dependent cis-dihydroxylation of benzoate by fully oxidized benzoate 1,2-dioxygenase.

Authors:  Matthew B Neibergall; Audria Stubna; Yasmina Mekmouche; Eckard Münck; John D Lipscomb
Journal:  Biochemistry       Date:  2007-06-14       Impact factor: 3.162

9.  Carnitine metabolism to trimethylamine by an unusual Rieske-type oxygenase from human microbiota.

Authors:  Yijun Zhu; Eleanor Jameson; Marialuisa Crosatti; Hendrik Schäfer; Kumar Rajakumar; Timothy D H Bugg; Yin Chen
Journal:  Proc Natl Acad Sci U S A       Date:  2014-03-03       Impact factor: 11.205

10.  Distal end of 105-125 loop--a putative reductase binding domain of phthalate dioxygenase.

Authors:  Michael Tarasev; Sailaja Pullela; David P Ballou
Journal:  Arch Biochem Biophys       Date:  2009-05-22       Impact factor: 4.013

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