Literature DB >> 14622009

Histidine ligand protonation and redox potential in the rieske dioxygenases: role of a conserved aspartate in anthranilate 1,2-dioxygenase.

Zanna M Beharry1, D Matthew Eby, Eric D Coulter, Rathinam Viswanathan, Ellen L Neidle, Robert S Phillips, Donald M Kurtz.   

Abstract

The Rieske dioxygenase, anthranilate 1,2-dioxygenase, catalyzes the 1,2-dihydroxylation of anthranilate (2-aminobenzoate). As in all characterized Rieske dioxygenases, the catalytic conversion to the diol occurs within the dioxygenase component, AntAB, at a mononuclear iron site which accepts electrons from a proximal Rieske [2Fe-2S] center. In the related naphthalene dioxygenase (NDO), a conserved aspartate residue lies between the mononuclear and Rieske iron centers, and is hydrogen-bonded to a histidine ligand of the Rieske center. Engineered substitutions of this aspartate residue led to complete inactivation, which was proposed to arise from elimination of a productive intersite electron transfer pathway [Parales, R. E., Parales, J. V., and Gibson, D. T. (1999) J. Bacteriol. 181, 1831-1837]. Substitutions of the corresponding aspartate, D218, in AntAB with alanine, asparagine, or glutamate also resulted in enzymes that were completely inactive over a wide pH range despite retention of the hexameric quaternary structure and iron center occupancy. The Rieske center reduction potential of this variant was measured to be approximately 100 mV more negative than that for the wild-type enzyme at neutral pH. The wild-type AntAB became completely inactive at pH 9 and exhibited an altered Rieske center absorption spectrum which resembled that of the D218 variants at neutral pH. These results support a role for this aspartate in maintaining the protonated state and reduction potential of the Rieske center. Both the wild-type and D218A variant AntABs exhibited substrate-dependent rapid phases of Rieske center oxidations in stopped-flow time courses. This observation does not support a role for this aspartate in a facile intersite electron transfer pathway or in productive substrate gating of the Rieske center reduction potential. However, since the single turnovers resulted in anthranilate dihydroxylation by the wild-type enzyme but not by the D218A variant, this aspartate must also play a crucial role in substrate dihydroxylation at or near the mononuclear iron site.

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Year:  2003        PMID: 14622009     DOI: 10.1021/bi035385n

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  14 in total

1.  Transcriptional regulation of the ant operon, encoding two-component anthranilate 1,2-dioxygenase, on the carbazole-degradative plasmid pCAR1 of Pseudomonas resinovorans strain CA10.

Authors:  Masaaki Urata; Masatoshi Miyakoshi; Satoshi Kai; Kana Maeda; Hiroshi Habe; Toshio Omori; Hisakazu Yamane; Hideaki Nojiri
Journal:  J Bacteriol       Date:  2004-10       Impact factor: 3.490

2.  Combining steady-state and dynamic methods for determining absolute signs of hyperfine interactions: pulsed ENDOR Saturation and Recovery (PESTRE).

Authors:  Peter E Doan
Journal:  J Magn Reson       Date:  2010-10-14       Impact factor: 2.229

3.  Similar enzymes, different structures: phthalate dioxygenase is an alpha3alpha3 stacked hexamer, not an alpha3beta3 trimer like "normal" Rieske oxygenases.

Authors:  Michael Tarasev; Catherine S Kaddis; Sheng Yin; Joseph A Loo; John Burgner; David P Ballou
Journal:  Arch Biochem Biophys       Date:  2007-07-14       Impact factor: 4.013

4.  Near-IR MCD of the nonheme ferrous active site in naphthalene 1,2-dioxygenase: correlation to crystallography and structural insight into the mechanism of Rieske dioxygenases.

Authors:  Takehiro Ohta; Sarmistha Chakrabarty; John D Lipscomb; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2008-01-12       Impact factor: 15.419

5.  Rate-Determining Attack on Substrate Precedes Rieske Cluster Oxidation during Cis-Dihydroxylation by Benzoate Dioxygenase.

Authors:  Brent S Rivard; Melanie S Rogers; Daniel J Marell; Matthew B Neibergall; Sarmistha Chakrabarty; Christopher J Cramer; John D Lipscomb
Journal:  Biochemistry       Date:  2015-07-21       Impact factor: 3.162

Review 6.  Metalloproteins containing cytochrome, iron-sulfur, or copper redox centers.

Authors:  Jing Liu; Saumen Chakraborty; Parisa Hosseinzadeh; Yang Yu; Shiliang Tian; Igor Petrik; Ambika Bhagi; Yi Lu
Journal:  Chem Rev       Date:  2014-04-23       Impact factor: 60.622

7.  Characterization of a novel Rieske-type alkane monooxygenase system in Pusillimonas sp. strain T7-7.

Authors:  Ping Li; Lei Wang; Lu Feng
Journal:  J Bacteriol       Date:  2013-02-15       Impact factor: 3.490

8.  The "bridging" aspartate 178 in phthalate dioxygenase facilitates interactions between the Rieske center and the iron(II)--mononuclear center.

Authors:  Michael Tarasev; Alex Pinto; Duke Kim; Sean J Elliott; David P Ballou
Journal:  Biochemistry       Date:  2006-08-29       Impact factor: 3.162

Review 9.  Versatility of biological non-heme Fe(II) centers in oxygen activation reactions.

Authors:  Elena G Kovaleva; John D Lipscomb
Journal:  Nat Chem Biol       Date:  2008-03       Impact factor: 15.040

10.  Resonance Raman studies of the (His)(Cys)3 2Fe-2S cluster of MitoNEET: comparison to the (Cys)4 mutant and implications of the effects of pH on the labile metal center.

Authors:  Timothy F Tirrell; Mark L Paddock; Andrea R Conlan; Eric J Smoll; Rachel Nechushtai; Patricia A Jennings; Judy E Kim
Journal:  Biochemistry       Date:  2009-06-09       Impact factor: 3.162

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