Literature DB >> 16896229

Genevestigator. Facilitating web-based gene-expression analysis.

Aleel K Grennan1.   

Abstract

Mesh：

Year:  2006        PMID： 16896229      PMCID： PMC1533917          DOI： 10.1104/pp.104.900198

Source DB:  PubMed          Journal:  Plant Physiol        ISSN： 0032-0889            Impact factor:   8.340


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  15 in total

1.  GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.

Authors:  Philip Zimmermann; Matthias Hirsch-Hoffmann; Lars Hennig; Wilhelm Gruissem
Journal:  Plant Physiol       Date:  2004-09       Impact factor: 8.340

2.  The Botany Array Resource: e-Northerns, Expression Angling, and promoter analyses.

Authors:  Kiana Toufighi; Siobhan M Brady; Ryan Austin; Eugene Ly; Nicholas J Provart
Journal:  Plant J       Date:  2005-07       Impact factor: 6.417

Review 3.  Handling calcium signaling: Arabidopsis CaMs and CMLs.

Authors:  Elizabeth McCormack; Yu-Chang Tsai; Janet Braam
Journal:  Trends Plant Sci       Date:  2005-08       Impact factor: 18.313

4.  Gene-expression analysis and network discovery using Genevestigator.

Authors:  Philip Zimmermann; Lars Hennig; Wilhelm Gruissem
Journal:  Trends Plant Sci       Date:  2005-09       Impact factor: 18.313

5.  The SOL Genomics Network: a comparative resource for Solanaceae biology and beyond.

Authors:  Lukas A Mueller; Teri H Solow; Nicolas Taylor; Beth Skwarecki; Robert Buels; John Binns; Chenwei Lin; Mark H Wright; Robert Ahrens; Ying Wang; Evan V Herbst; Emil R Keyder; Naama Menda; Dani Zamir; Steven D Tanksley
Journal:  Plant Physiol       Date:  2005-07       Impact factor: 8.340

6.  Folate metabolism in plants: an Arabidopsis homolog of the mammalian mitochondrial folate transporter mediates folate import into chloroplasts.

Authors:  Mariette Bedhomme; Michaela Hoffmann; Erin A McCarthy; Bernadette Gambonnet; Richard G Moran; Fabrice Rébeillé; Stéphane Ravanel
Journal:  J Biol Chem       Date:  2005-07-29       Impact factor: 5.157

7.  Analysis of the transcriptional complexity of Arabidopsis thaliana by massively parallel signature sequencing.

Authors:  Blake C Meyers; Tam H Vu; Shivakundan Singh Tej; Hassan Ghazal; Marta Matvienko; Vikas Agrawal; Jianchang Ning; Christian D Haudenschild
Journal:  Nat Biotechnol       Date:  2004-07-11       Impact factor: 54.908

8.  The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community.

Authors:  Seung Yon Rhee; William Beavis; Tanya Z Berardini; Guanghong Chen; David Dixon; Aisling Doyle; Margarita Garcia-Hernandez; Eva Huala; Gabriel Lander; Mary Montoya; Neil Miller; Lukas A Mueller; Suparna Mundodi; Leonore Reiser; Julie Tacklind; Dan C Weems; Yihe Wu; Iris Xu; Daniel Yoo; Jungwon Yoon; Peifen Zhang
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

9.  Web-based analysis of the mouse transcriptome using Genevestigator.

Authors:  Oliver Laule; Matthias Hirsch-Hoffmann; Tomas Hruz; Wilhelm Gruissem; Philip Zimmermann
Journal:  BMC Bioinformatics       Date:  2006-06-21       Impact factor: 3.169

10.  BarleyBase--an expression profiling database for plant genomics.

Authors:  Lishuang Shen; Jian Gong; Rico A Caldo; Dan Nettleton; Dianne Cook; Roger P Wise; Julie A Dickerson
Journal:  Nucleic Acids Res       Date:  2005-01-01       Impact factor: 16.971
View more
  46 in total

1.  Specific/nonspecific binding of TBP to promoter DNA of the auxin response factor genes in plants correlated with ARFs function on gene transcription (activator/repressor).

Authors:  V V Mironova; N A Omelyanchuk; P M Ponomarenko; M P Ponomarenko; N A Kolchanov
Journal:  Dokl Biochem Biophys       Date:  2010-08-17       Impact factor: 0.788

2.  Combining genetic diversity, informatics and metabolomics to facilitate annotation of plant gene function.

Authors:  Takayuki Tohge; Alisdair R Fernie
Journal:  Nat Protoc       Date:  2010-06-10       Impact factor: 13.491

Review 3.  Functional analysis of transcription factors in Arabidopsis.

Authors:  Nobutaka Mitsuda; Masaru Ohme-Takagi
Journal:  Plant Cell Physiol       Date:  2009-05-28       Impact factor: 4.927

Review 4.  Web-queryable large-scale data sets for hypothesis generation in plant biology.

Authors:  Siobhan M Brady; Nicholas J Provart
Journal:  Plant Cell       Date:  2009-04-28       Impact factor: 11.277

Review 5.  Protein Bioinformatics Databases and Resources.

Authors:  Chuming Chen; Hongzhan Huang; Cathy H Wu
Journal:  Methods Mol Biol       Date:  2017

6.  Expression analysis of genes encoding double B-box zinc finger proteins in maize.

Authors:  Wenlan Li; Jingchao Wang; Qi Sun; Wencai Li; Yanli Yu; Meng Zhao; Zhaodong Meng
Journal:  Funct Integr Genomics       Date:  2017-05-08       Impact factor: 3.410

7.  Plutella xylostella (L.) infestations at varying temperatures induce the emission of specific volatile blends by Arabidopsis thaliana (L.) Heynh.

Authors:  Dieu-Hien Truong; Benjamin M Delory; Yves Brostaux; Stéphanie Heuskin; Pierre Delaplace; Frédéric Francis; Georges Lognay
Journal:  Plant Signal Behav       Date:  2014

8.  SEUSS and SEUSS-LIKE transcriptional adaptors regulate floral and embryonic development in Arabidopsis.

Authors:  Fang Bao; Sridevi Azhakanandam; Robert G Franks
Journal:  Plant Physiol       Date:  2009-12-09       Impact factor: 8.340

9.  Effective carbon partitioning driven by exotic phloem-specific regulatory elements fused to the Arabidopsis thaliana AtSUC2 sucrose-proton symporter gene.

Authors:  Avinash C Srivastava; Savita Ganesan; Ihab O Ismail; Brian G Ayre
Journal:  BMC Plant Biol       Date:  2009-01-20       Impact factor: 4.215

10.  Evolution of plant senescence.

Authors:  Howard Thomas; Lin Huang; Mike Young; Helen Ougham
Journal:  BMC Evol Biol       Date:  2009-07-14       Impact factor: 3.260
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