Literature DB >> 20714854

Specific/nonspecific binding of TBP to promoter DNA of the auxin response factor genes in plants correlated with ARFs function on gene transcription (activator/repressor).

V V Mironova1, N A Omelyanchuk, P M Ponomarenko, M P Ponomarenko, N A Kolchanov.   

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Year:  2010        PMID： 20714854     DOI： 10.1134/S1607672910040125

Source DB:  PubMed          Journal:  Dokl Biochem Biophys        ISSN： 1607-6729            Impact factor:   0.788


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  14 in total

1.  Identification of sequence-dependent DNA features correlating to activity of DNA sites interacting with proteins.

Authors:  M P Ponomarenko; J V Ponomarenko; A S Frolov; N L Podkolodny; L K Savinkova; N A Kolchanov; G C Overton
Journal:  Bioinformatics       Date:  1999 Jul-Aug       Impact factor: 6.937

2.  Functional binding of the "TATA" box binding component of transcription factor TFIID to the -30 region of TATA-less promoters.

Authors:  S R Wiley; R J Kraus; J E Mertz
Journal:  Proc Natl Acad Sci U S A       Date:  1992-07-01       Impact factor: 11.205

3.  Genevestigator. Facilitating web-based gene-expression analysis.

Authors:  Aleel K Grennan
Journal:  Plant Physiol       Date:  2006-08       Impact factor: 8.340

Review 4.  Auxin response factors.

Authors:  Tom J Guilfoyle; Gretchen Hagen
Journal:  Curr Opin Plant Biol       Date:  2007-09-27       Impact factor: 7.834

5.  Comprehensive expression profiling analysis of OsIAA gene family in developmental processes and in response to phytohormone and stress treatments.

Authors:  Yaling Song; Lei Wang; Lizhong Xiong
Journal:  Planta       Date:  2008-11-26       Impact factor: 4.116

6.  Functional genomic analysis of the AUXIN RESPONSE FACTOR gene family members in Arabidopsis thaliana: unique and overlapping functions of ARF7 and ARF19.

Authors:  Yoko Okushima; Paul J Overvoorde; Kazunari Arima; Jose M Alonso; April Chan; Charlie Chang; Joseph R Ecker; Beth Hughes; Amy Lui; Diana Nguyen; Courtney Onodera; Hong Quach; Alison Smith; Guixia Yu; Athanasios Theologis
Journal:  Plant Cell       Date:  2005-01-19       Impact factor: 11.277

7.  TATA box and initiator functions in the accurate transcription of a plant minimal promoter in vitro.

Authors:  Q Zhu; T Dabi; C Lamb
Journal:  Plant Cell       Date:  1995-10       Impact factor: 11.277

8.  A step-by-step model of TBP/TATA box binding allows predicting human hereditary diseases by single nucleotide polymorphism.

Authors:  P M Ponomarenko; L K Savinkova; I A Drachkova; M V Lysova; T V Arshinova; M P Ponomarenko; N A Kolchanov
Journal:  Dokl Biochem Biophys       Date:  2008 Mar-Apr       Impact factor: 0.834

9.  Comprehensive transcriptome analysis of phytohormone biosynthesis and signaling genes in microspore/pollen and tapetum of rice.

Authors:  Ko Hirano; Koichiro Aya; Tokunori Hobo; Hitoshi Sakakibara; Mikiko Kojima; Rosalyn Angeles Shim; Yasuko Hasegawa; Miyako Ueguchi-Tanaka; Makoto Matsuoka
Journal:  Plant Cell Physiol       Date:  2008-08-20       Impact factor: 4.927

10.  Rate of promoter class turn-over in yeast evolution.

Authors:  Georgii A Bazykin; Alexey S Kondrashov
Journal:  BMC Evol Biol       Date:  2006-02-10       Impact factor: 3.260
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  6 in total

1.  Candidate SNP markers of aggressiveness-related complications and comorbidities of genetic diseases are predicted by a significant change in the affinity of TATA-binding protein for human gene promoters.

Authors:  Irina V Chadaeva; Mikhail P Ponomarenko; Dmitry A Rasskazov; Ekaterina B Sharypova; Elena V Kashina; Marina Yu Matveeva; Tatjana V Arshinova; Petr M Ponomarenko; Olga V Arkova; Natalia P Bondar; Ludmila K Savinkova; Nikolay A Kolchanov
Journal:  BMC Genomics       Date:  2016-12-28       Impact factor: 3.969

2.  How to Use SNP_TATA_Comparator to Find a Significant Change in Gene Expression Caused by the Regulatory SNP of This Gene's Promoter via a Change in Affinity of the TATA-Binding Protein for This Promoter.

Authors:  Mikhail Ponomarenko; Dmitry Rasskazov; Olga Arkova; Petr Ponomarenko; Valentin Suslov; Ludmila Savinkova; Nikolay Kolchanov
Journal:  Biomed Res Int       Date:  2015-10-04       Impact factor: 3.411

3.  Obesity-related known and candidate SNP markers can significantly change affinity of TATA-binding protein for human gene promoters.

Authors:  Olga V Arkova; Mikhail P Ponomarenko; Dmitry A Rasskazov; Irina A Drachkova; Tatjana V Arshinova; Petr M Ponomarenko; Ludmila K Savinkova; Nikolay A Kolchanov
Journal:  BMC Genomics       Date:  2015-12-16       Impact factor: 3.969

4.  Candidate SNP Markers of Chronopathologies Are Predicted by a Significant Change in the Affinity of TATA-Binding Protein for Human Gene Promoters.

Authors:  Petr Ponomarenko; Dmitry Rasskazov; Valentin Suslov; Ekaterina Sharypova; Ludmila Savinkova; Olga Podkolodnaya; Nikolay L Podkolodny; Natalya N Tverdokhleb; Irina Chadaeva; Mikhail Ponomarenko; Nikolay Kolchanov
Journal:  Biomed Res Int       Date:  2016-08-22       Impact factor: 3.411

5.  Candidate SNP markers of reproductive potential are predicted by a significant change in the affinity of TATA-binding protein for human gene promoters.

Authors:  Irina V Chadaeva; Petr M Ponomarenko; Dmitry A Rasskazov; Ekaterina B Sharypova; Elena V Kashina; Dmitry A Zhechev; Irina A Drachkova; Olga V Arkova; Ludmila K Savinkova; Mikhail P Ponomarenko; Nikolay A Kolchanov; Ludmila V Osadchuk; Alexandr V Osadchuk
Journal:  BMC Genomics       Date:  2018-02-09       Impact factor: 3.969

6.  Candidate SNP Markers of Gender-Biased Autoimmune Complications of Monogenic Diseases Are Predicted by a Significant Change in the Affinity of TATA-Binding Protein for Human Gene Promoters.

Authors:  Mikhail P Ponomarenko; Olga Arkova; Dmitry Rasskazov; Petr Ponomarenko; Ludmila Savinkova; Nikolay Kolchanov
Journal:  Front Immunol       Date:  2016-04-04       Impact factor: 7.561
  6 in total

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