Literature DB >> 15960624

The Botany Array Resource: e-Northerns, Expression Angling, and promoter analyses.

Kiana Toufighi1, Siobhan M Brady, Ryan Austin, Eugene Ly, Nicholas J Provart.   

Abstract

The Botany Array Resource provides the means for obtaining and archiving microarray data for Arabidopsis thaliana as well as biologist-friendly tools for viewing and mining both our own and other's data, for example, from the AtGenExpress Consortium. All the data produced are publicly available through the web interface of the database at http://bbc.botany.utoronto.ca. The database has been designed in accordance with the Minimum Information About a Microarray Experiment convention -- all expression data are associated with the corresponding experimental details. The database is searchable and it also provides a set of useful and easy-to-use web-based data-mining tools for researchers with sophisticated yet understandable output graphics. These include Expression Browser for performing 'electronic Northerns', Expression Angler for identifying genes that are co-regulated with a gene of interest, and Promomer for identifying potential cis-elements in the promoters of individual or co-regulated genes.

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Mesh:

Year:  2005        PMID: 15960624     DOI: 10.1111/j.1365-313X.2005.02437.x

Source DB:  PubMed          Journal:  Plant J        ISSN: 0960-7412            Impact factor:   6.417


  314 in total

1.  SCI1, the first member of the tissue-specific inhibitors of CDK (TIC) class, is probably connected to the auxin signaling pathway.

Authors:  Henrique C DePaoli; Gustavo H Goldman; Maria-Helena S Goldman
Journal:  Plant Signal Behav       Date:  2012-01

2.  Embryogenesis: pattern formation from a single cell.

Authors:  Arnaud Capron; Steven Chatfield; Nicholas Provart; Thomas Berleth
Journal:  Arabidopsis Book       Date:  2009-11-12

3.  Taking the next step: building an Arabidopsis information portal.

Authors: 
Journal:  Plant Cell       Date:  2012-06-29       Impact factor: 11.277

Review 4.  Sustainable digital infrastructure. Although databases and other online resources have become a central tool for biological research, their long-term support and maintenance is far from secure.

Authors:  Ruth Bastow; Sabina Leonelli
Journal:  EMBO Rep       Date:  2010-09-17       Impact factor: 8.807

Review 5.  Coexpression landscape in ATTED-II: usage of gene list and gene network for various types of pathways.

Authors:  Takeshi Obayashi; Kengo Kinoshita
Journal:  J Plant Res       Date:  2010-04-10       Impact factor: 2.629

6.  Toward genome-wide metabolotyping and elucidation of metabolic system: metabolic profiling of large-scale bioresources.

Authors:  Masami Yokota Hirai; Yuji Sawada; Shigehiko Kanaya; Takashi Kuromori; Masatomo Kobayashi; Romy Klausnitzer; Kosuke Hanada; Kenji Akiyama; Tetsuya Sakurai; Kazuki Saito; Kazuo Shinozaki
Journal:  J Plant Res       Date:  2010-04-06       Impact factor: 2.629

7.  Combining genetic diversity, informatics and metabolomics to facilitate annotation of plant gene function.

Authors:  Takayuki Tohge; Alisdair R Fernie
Journal:  Nat Protoc       Date:  2010-06-10       Impact factor: 13.491

8.  EAR motif-mediated transcriptional repression in plants: an underlying mechanism for epigenetic regulation of gene expression.

Authors:  Sateesh Kagale; Kevin Rozwadowski
Journal:  Epigenetics       Date:  2011-02-01       Impact factor: 4.528

9.  Glucosinolate breakdown in Arabidopsis: mechanism, regulation and biological significance.

Authors:  Ute Wittstock; Meike Burow
Journal:  Arabidopsis Book       Date:  2010-07-12

10.  Disruption of abscisic acid signaling constitutively activates Arabidopsis resistance to the necrotrophic fungus Plectosphaerella cucumerina.

Authors:  Andrea Sánchez-Vallet; Gemma López; Brisa Ramos; Magdalena Delgado-Cerezo; Marie-Pierre Riviere; Francisco Llorente; Paula Virginia Fernández; Eva Miedes; José Manuel Estevez; Murray Grant; Antonio Molina
Journal:  Plant Physiol       Date:  2012-10-04       Impact factor: 8.340

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