Literature DB >> 16081312

Gene-expression analysis and network discovery using Genevestigator.

Philip Zimmermann1, Lars Hennig, Wilhelm Gruissem.   

Abstract

The Genevestigator software suite belongs to a new generation of web-based tools that provide categorized quantitative information about elements (genes or annotations) contained in large microarray databases. The first version of Genevestigator, in use since 2004, has now been updated to enable faster, more powerful and more diverse types of queries for gene-function analysis and network discovery.

Mesh：

Year:  2005        PMID： 16081312     DOI： 10.1016/j.tplants.2005.07.003

Source DB:  PubMed          Journal:  Trends Plant Sci        ISSN： 1360-1385            Impact factor:   18.313


  106 in total

1.  RLK7, a leucine-rich repeat receptor-like kinase, is required for proper germination speed and tolerance to oxidative stress in Arabidopsis thaliana.

Authors:  Delphine Pitorre; Christel Llauro; Edouard Jobet; Jocelyne Guilleminot; Jean-Paul Brizard; Michel Delseny; Eric Lasserre
Journal:  Planta       Date:  2010-09-02       Impact factor: 4.116

Review 2.  Sustainable digital infrastructure. Although databases and other online resources have become a central tool for biological research, their long-term support and maintenance is far from secure.

Authors:  Ruth Bastow; Sabina Leonelli
Journal:  EMBO Rep       Date:  2010-09-17       Impact factor: 8.807

3.  Web-based Arabidopsis functional and structural genomics resources.

Authors:  Yan Lu; Robert L Last
Journal:  Arabidopsis Book       Date:  2008-10-28

4.  The PPH1 phosphatase is specifically involved in LHCII dephosphorylation and state transitions in Arabidopsis.

Authors:  Alexey Shapiguzov; Björn Ingelsson; Iga Samol; Charles Andres; Felix Kessler; Jean-David Rochaix; Alexander V Vener; Michel Goldschmidt-Clermont
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-22       Impact factor: 11.205

5.  Genevestigator. Facilitating web-based gene-expression analysis.

Authors:  Aleel K Grennan
Journal:  Plant Physiol       Date:  2006-08       Impact factor: 8.340

6.  LucTrap vectors are tools to generate luciferase fusions for the quantification of transcript and protein abundance in vivo.

Authors:  Luz Irina A Calderon-Villalobos; Carola Kuhnle; Hanbing Li; Mario Rosso; Bernd Weisshaar; Claus Schwechheimer
Journal:  Plant Physiol       Date:  2006-05       Impact factor: 8.340

7.  Developmental expression patterns of Arabidopsis XTH genes reported by transgenes and Genevestigator.

Authors:  Jaime Becnel; Mukil Natarajan; Alex Kipp; Janet Braam
Journal:  Plant Mol Biol       Date:  2006-06       Impact factor: 4.076

8.  Modulating plant primary amino acid metabolism as a necrotrophic virulence strategy: the immune-regulatory role of asparagine synthetase in Botrytis cinerea-tomato interaction.

Authors:  Hamed Seifi; David De Vleesschauwer; Aziz Aziz; Monica Höfte
Journal:  Plant Signal Behav       Date:  2014-02-12

9.  Characterization and biological function of the ISOCHORISMATE SYNTHASE2 gene of Arabidopsis.

Authors:  Christophe Garcion; Antje Lohmann; Elisabeth Lamodière; Jérémy Catinot; Antony Buchala; Peter Doermann; Jean-Pierre Métraux
Journal:  Plant Physiol       Date:  2008-05-01       Impact factor: 8.340

10.  In planta analysis of the cell cycle-dependent localization of AtCDC48A and its critical roles in cell division, expansion, and differentiation.

Authors:  Sookhee Park; David Michael Rancour; Sebastian York Bednarek
Journal:  Plant Physiol       Date:  2008-07-25       Impact factor: 8.340
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