Literature DB >> 29094196

Transcription termination factor Rho and microbial phenotypic heterogeneity.

Elena Bidnenko1, Vladimir Bidnenko2.   

Abstract

Populations of genetically identical microorganisms exhibit high degree of cell-to-cell phenotypic diversity even when grown in uniform environmental conditions. Heterogeneity is a genetically determined trait, which ensures bacterial adaptation and survival in the ever changing environmental conditions. Fluctuations in gene expression (noise) at the level of transcription initiation largely contribute to cell-to-cell variability within population. Not surprisingly, the analyses of the mechanisms driving phenotypic heterogeneity are mainly focused on the activity of promoters and transcriptional factors. Less attention is currently given to a role of intrinsic and factor-dependent transcription terminators. Here, we discuss recent advances in understanding the regulatory role of the multi-functional transcription termination factor Rho, the major inhibitor of pervasive transcription in bacteria and the emerging global regulator of gene expression. We propose that termination activity of Rho might be among the mechanisms by which cells manage the intensity of transcriptional noise, thus affecting population heterogeneity.

Keywords:  Pervasive transcription; Phenotypic heterogeneity; Transcription termination factor Rho

Mesh:

Substances:

Year:  2017        PMID: 29094196     DOI: 10.1007/s00294-017-0775-7

Source DB:  PubMed          Journal:  Curr Genet        ISSN: 0172-8083            Impact factor:   3.886


  69 in total

Review 1.  Noise and robustness in prokaryotic regulatory networks.

Authors:  Rafael Silva-Rocha; Víctor de Lorenzo
Journal:  Annu Rev Microbiol       Date:  2010       Impact factor: 15.500

2.  A bacterial global regulator forms a prion.

Authors:  Andy H Yuan; Ann Hochschild
Journal:  Science       Date:  2017-01-13       Impact factor: 47.728

3.  Specificity of genome evolution in experimental populations of Escherichia coli evolved at different temperatures.

Authors:  Daniel E Deatherage; Jamie L Kepner; Albert F Bennett; Richard E Lenski; Jeffrey E Barrick
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-15       Impact factor: 11.205

4.  Bet-hedging during bacterial diauxic shift.

Authors:  Ana Solopova; Jordi van Gestel; Franz J Weissing; Herwig Bachmann; Bas Teusink; Jan Kok; Oscar P Kuipers
Journal:  Proc Natl Acad Sci U S A       Date:  2014-05-05       Impact factor: 11.205

Review 5.  Regulatory RNAs in Bacillus subtilis: a Gram-Positive Perspective on Bacterial RNA-Mediated Regulation of Gene Expression.

Authors:  Ruben A T Mars; Pierre Nicolas; Emma L Denham; Jan Maarten van Dijl
Journal:  Microbiol Mol Biol Rev       Date:  2016-10-26       Impact factor: 11.056

Review 6.  Bacterial differentiation via gradual activation of global regulators.

Authors:  Ákos T Kovács
Journal:  Curr Genet       Date:  2015-10-12       Impact factor: 3.886

7.  Comprehensive absolute quantification of the cytosolic proteome of Bacillus subtilis by data independent, parallel fragmentation in liquid chromatography/mass spectrometry (LC/MS(E)).

Authors:  Jan Muntel; Vincent Fromion; Anne Goelzer; Sandra Maaβ; Ulrike Mäder; Knut Büttner; Michael Hecker; Dörte Becher
Journal:  Mol Cell Proteomics       Date:  2014-01-31       Impact factor: 5.911

8.  Association of the Cold Shock DEAD-Box RNA Helicase RhlE to the RNA Degradosome in Caulobacter crescentus.

Authors:  Angel A Aguirre; Alexandre M Vicente; Steven W Hardwick; Daniela M Alvelos; Ricardo R Mazzon; Ben F Luisi; Marilis V Marques
Journal:  J Bacteriol       Date:  2017-06-13       Impact factor: 3.490

9.  Depleting Mycobacterium tuberculosis of the transcription termination factor Rho causes pervasive transcription and rapid death.

Authors:  Laure Botella; Julien Vaubourgeix; Jonathan Livny; Dirk Schnappinger
Journal:  Nat Commun       Date:  2017-03-28       Impact factor: 14.919

10.  Termination factor Rho: From the control of pervasive transcription to cell fate determination in Bacillus subtilis.

Authors:  Vladimir Bidnenko; Pierre Nicolas; Aleksandra Grylak-Mielnicka; Olivier Delumeau; Sandrine Auger; Anne Aucouturier; Cyprien Guerin; Francis Repoila; Jacek Bardowski; Stéphane Aymerich; Elena Bidnenko
Journal:  PLoS Genet       Date:  2017-07-19       Impact factor: 5.917

View more
  8 in total

Review 1.  New molecular interactions broaden the functions of the RNA chaperone Hfq.

Authors:  Ricardo F Dos Santos; Cecília M Arraiano; José M Andrade
Journal:  Curr Genet       Date:  2019-05-18       Impact factor: 3.886

Review 2.  Mastering the control of the Rho transcription factor for biotechnological applications.

Authors:  Tomás G Villa; Ana G Abril; Angeles Sánchez-Pérez
Journal:  Appl Microbiol Biotechnol       Date:  2021-05-08       Impact factor: 4.813

Review 3.  Tuning the sequence specificity of a transcription terminator.

Authors:  Michael R Lawson; James M Berger
Journal:  Curr Genet       Date:  2019-02-09       Impact factor: 3.886

Review 4.  A bacterial signaling system regulates noise to enable bet hedging.

Authors:  Jeffrey N Carey; Mark Goulian
Journal:  Curr Genet       Date:  2018-06-12       Impact factor: 3.886

Review 5.  Rho-dependent transcription termination: a revisionist view.

Authors:  Zhitai Hao; Vladimir Svetlov; Evgeny Nudler
Journal:  Transcription       Date:  2021-10-27

Review 6.  New sequencing methodologies reveal interplay between multiple RNA-binding proteins and their RNAs.

Authors:  Sahar Melamed
Journal:  Curr Genet       Date:  2020-03-19       Impact factor: 3.886

7.  Regulation of Heterogenous LexA Expression in Staphylococcus aureus by an Antisense RNA Originating from Transcriptional Read-Through upon Natural Mispairings in the sbrB Intrinsic Terminator.

Authors:  Laurène Bastet; Pilar Bustos-Sanmamed; Arancha Catalan-Moreno; Carlos J Caballero; Sergio Cuesta; Leticia Matilla-Cuenca; Maite Villanueva; Jaione Valle; Iñigo Lasa; Alejandro Toledo-Arana
Journal:  Int J Mol Sci       Date:  2022-01-05       Impact factor: 5.923

8.  Genome-Wide Screening of Oxidizing Agent Resistance Genes in Escherichia coli.

Authors:  Hao Chen; Jessica Wilson; Carson Ercanbrack; Hannah Smith; Qinglei Gan; Chenguang Fan
Journal:  Antioxidants (Basel)       Date:  2021-05-27
  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.