Literature DB >> 16826537

Cell-free expression and selective isotope labelling in protein NMR.

David Staunton1, Robin Schlinkert, Giulia Zanetti, Simon A Colebrook, Iain D Campbell.   

Abstract

Isotope labelling is a very powerful tool in NMR studies of proteins and has been employed in various ways for over 40 years. 15N and 13C incorporation, using recombinant expression systems, is now commonplace because heteronuclear experiments assist with the fundamental problems of peak resolution and assignment. The use of selective labelling for peak assignment has been restricted by the scrambling of isotope label through metabolic pathways within the expression host organism. The availability of efficient cell-free expression systems with low levels of metabolic conversion allow the increasing use of selective isotope labelling as a tool in protein NMR. We describe two examples, one where a selective labelling scheme can identify backbone amide peaks from unassigned 1H--15N HSQC and HNCO spectra of a 84 residue protein, and another where a specific backbone amide in a 198 residue construct of the ninth and tenth Type III repeats from human fibronectin can be labelled and rapidly identified using a simple HSQC experiment.

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Year:  2006        PMID: 16826537     DOI: 10.1002/mrc.1835

Source DB:  PubMed          Journal:  Magn Reson Chem        ISSN: 0749-1581            Impact factor:   2.447


  19 in total

1.  High-yield Escherichia coli-based cell-free expression of human proteins.

Authors:  Erich Michel; Kurt Wüthrich
Journal:  J Biomol NMR       Date:  2012-03-15       Impact factor: 2.835

2.  Stable isotope labeling strategy based on coding theory.

Authors:  Takuma Kasai; Seizo Koshiba; Jun Yokoyama; Takanori Kigawa
Journal:  J Biomol NMR       Date:  2015-08-21       Impact factor: 2.835

3.  Spectral editing at ultra-fast magic-angle-spinning in solid-state NMR: facilitating protein sequential signal assignment by HIGHLIGHT approach.

Authors:  Songlin Wang; Isamu Matsuda; Fei Long; Yoshitaka Ishii
Journal:  J Biomol NMR       Date:  2016-01-19       Impact factor: 2.835

4.  A simple method for amino acid selective isotope labeling of recombinant proteins in E. coli.

Authors:  Kit I Tong; Masayuki Yamamoto; Toshiyuki Tanaka
Journal:  J Biomol NMR       Date:  2008-09-02       Impact factor: 2.835

5.  CombLabel: rational design of optimized sequence-specific combinatorial labeling schemes. Application to backbone assignment of membrane proteins with low stability.

Authors:  M Yu Myshkin; M A Dubinnyi; D S Kulbatskii; E N Lyukmanova; M P Kirpichnikov; Z O Shenkarev
Journal:  J Biomol NMR       Date:  2019-07-08       Impact factor: 2.835

6.  A rapid and robust method for selective isotope labeling of proteins.

Authors:  Myat T Lin; Lindsay J Sperling; Heather L Frericks Schmidt; Ming Tang; Rimma I Samoilova; Takashi Kumasaka; Toshio Iwasaki; Sergei A Dikanov; Chad M Rienstra; Robert B Gennis
Journal:  Methods       Date:  2011-09-08       Impact factor: 3.608

7.  Suppression of isotope scrambling in cell-free protein synthesis by broadband inhibition of PLP enymes for selective 15N-labelling and production of perdeuterated proteins in H2O.

Authors:  Xun-Cheng Su; Choy-Theng Loh; Ruhu Qi; Gottfried Otting
Journal:  J Biomol NMR       Date:  2011-02-12       Impact factor: 2.835

8.  Time-shared experiments for efficient assignment of triple-selectively labeled proteins.

Authors:  Frank Löhr; Aisha Laguerre; Christoph Bock; Sina Reckel; Peter J Connolly; Norzehan Abdul-Manan; Franz Tumulka; Rupert Abele; Jonathan M Moore; Volker Dötsch
Journal:  J Magn Reson       Date:  2014-09-30       Impact factor: 2.229

9.  Selective (15)N-labeling of the side-chain amide groups of asparagine and glutamine for applications in paramagnetic NMR spectroscopy.

Authors:  Chan Cao; Jia-Liang Chen; Yin Yang; Feng Huang; Gottfried Otting; Xun-Cheng Su
Journal:  J Biomol NMR       Date:  2014-07-08       Impact factor: 2.835

10.  α-Ketoacids as precursors for phenylalanine and tyrosine labelling in cell-based protein overexpression.

Authors:  Roman J Lichtenecker; Katharina Weinhäupl; Walther Schmid; Robert Konrat
Journal:  J Biomol NMR       Date:  2013-11-22       Impact factor: 2.835

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