Literature DB >> 16813405

Models of the cytochromes: crystal structures and EPR spectral characterization of low-spin bis-imidazole complexes of (OETPP)Fe(III) having intermediate ligand plane dihedral angles.

Liliya A Yatsunyk1, Alice Dawson, Michael D Carducci, Gary S Nichol, F Ann Walker.   

Abstract

The preparation, EPR spectra, and crystal structures of octaethyltetraphenylporphyrinatoiron(III) having two imidazole, N-benzylimidazole, and N-methylimidazole axial ligands are reported, [(OETPP)Fe(HIm)2]Cl, [(OETPP)Fe(N-BzIm)2]Cl, and [(OETPP)Fe(N-MeIm)2]Cl. Despite large variation in axial ligand size, the unit cell parameters for all complexes are very similar; each structure has the same basic motif, with large voids formed by the extended porphyrin framework (filled by ordered or disordered axial ligands and disordered solvent), which allows differently sized ligands to fit within the same cell dimensions. Each porphyrin core adopts a saddled conformation with absolute value(deltaC(beta)) = 1.13-1.15 A. The dihedral angles between axial ligand planes, delta phi, are far from being either ideal parallel or perpendicular: 30.1 degrees, 57.2 degrees for [(OETPP)Fe(HIm)2]Cl (molecules 1 and 2), 56.8 degrees for [(OETPP)Fe(N-BzIm)(2)]Cl, and 16.0 degrees, 44.6 degrees, 59.6 degrees, and 88.1 degrees for [(OETPP)Fe(N-MeIm)2]Cl, which has disordered axial ligands. Among the complexes of this study, an axial ligand delta phi of 56.8 degrees is found to be the largest "parallel" angle (as defined by the observation of a normal rhombic or Type II EPR signal (N-BzIm, g = 3.08, 2.19, 1.31)), while 57.2 degrees is found to be the smallest "perpendicular" delta phi (as defined by the observation of a "large gmax" or Type I EPR signal (HIm, gmax = 3.24)). From the results of this study, it is clear that the size of the largest g for Types I and II complexes varies continuously, with no break between the two. While the switch in EPR signal type, from Type II to Type I, appears to be very sharp in this study, this may be somewhat artificial based upon limited numbers of examples and the required saddle distortion of the (OETPP)Fe(III) complexes. However, in comparison to several proteins with dihedral angles near 60 degrees and Type II EPR spectra, we may conclude that the switch in EPR signal type occurs near 57 degrees +/- 3-5 degrees.

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Year:  2006        PMID: 16813405     DOI: 10.1021/ic060283h

Source DB:  PubMed          Journal:  Inorg Chem        ISSN: 0020-1669            Impact factor:   5.165


  12 in total

1.  Study of the individual cytochrome b5 and cytochrome b5 reductase domains of Ncb5or reveals a unique heme pocket and a possible role of the CS domain.

Authors:  Bin Deng; Sudharsan Parthasarathy; WenFang Wang; Brian R Gibney; Kevin P Battaile; Scott Lovell; David R Benson; Hao Zhu
Journal:  J Biol Chem       Date:  2010-07-14       Impact factor: 5.157

2.  Modulation of function in a minimalist heme-binding membrane protein.

Authors:  Sandip Shinde; Jeanine M Cordova; Brian W Woodrum; Giovanna Ghirlanda
Journal:  J Biol Inorg Chem       Date:  2012-02-04       Impact factor: 3.358

3.  Orientation and stereodynamic paths of planar monodentate ligands in square planar nickel N2S complexes.

Authors:  Roxanne M Jenkins; Michael L Singleton; Lauren A Leamer; Joseph H Reibenspies; Marcetta Y Darensbourg
Journal:  Inorg Chem       Date:  2010-06-21       Impact factor: 5.165

4.  Redox state dependence of axial ligand dynamics in Nitrosomonas europaea cytochrome c552.

Authors:  Ravinder Kaur; Kara L Bren
Journal:  J Phys Chem B       Date:  2013-08-20       Impact factor: 2.991

5.  Bis(cyano) Iron(III) Porphyrinates: What Is the Ground State?

Authors:  Jianfeng Li; Bruce C Noll; Charles E Schulz; W Robert Scheidt
Journal:  Inorg Chem       Date:  2015-06-22       Impact factor: 5.165

6.  De novo design and molecular assembly of a transmembrane diporphyrin-binding protein complex.

Authors:  Ivan V Korendovych; Alessandro Senes; Yong Ho Kim; James D Lear; H Christopher Fry; Michael J Therien; J Kent Blasie; F Ann Walker; William F Degrado
Journal:  J Am Chem Soc       Date:  2010-11-10       Impact factor: 15.419

Review 7.  The heme environment of mouse neuroglobin: histidine imidazole plane orientations obtained from solution NMR and EPR spectroscopy as compared with X-ray crystallography.

Authors:  F Ann Walker
Journal:  J Biol Inorg Chem       Date:  2006-04-04       Impact factor: 3.358

8.  Assignment of the ferriheme resonances of high- and low-spin forms of the symmetrical hemin-reconstituted nitrophorins 1-4 by 1H and 13C NMR spectroscopy: the dynamics of heme ruffling deformations.

Authors:  Tatiana K Shokhireva; Nikolai V Shokhirev; Robert E Berry; Hongjun Zhang; F Ann Walker
Journal:  J Biol Inorg Chem       Date:  2008-05-06       Impact factor: 3.358

9.  Assignment of Ferriheme Resonances for High- and Low-Spin Forms of Nitrophorin 3 by H and C NMR Spectroscopy and Comparison to Nitrophorin 2: Heme Pocket Structural Similarities and Differences.

Authors:  Tatiana Kh Shokhireva; Robert E Berry; Hongjun Zhang; Nikolai V Shokhirev; F Ann Walker
Journal:  Inorganica Chim Acta       Date:  2008-03-03       Impact factor: 2.545

Review 10.  Bis-histidine-coordinated hemes in four-helix bundles: how the geometry of the bundle controls the axial imidazole plane orientations in transmembrane cytochromes of mitochondrial complexes II and III and related proteins.

Authors:  Edward A Berry; F Ann Walker
Journal:  J Biol Inorg Chem       Date:  2008-05       Impact factor: 3.358

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