Literature DB >> 17558534

Effective metadata discovery for dynamic filtering of queries to a radiology image search engine.

Charles E Kahn1.   

Abstract

We sought to demonstrate the effectiveness of techniques to index radiology images using metadata discovered in their free-text figure captions. The ARRS GoldMiner image library incorporated 94,256 figures from 11,712 articles published in peer-reviewed online radiology journals. Algorithms were developed to discover metadata--age, sex, and imaging modality--from the figures' free-text captions. Age was recorded in years, and was classified as infant (less than 2 years), child (2 to 17 years), or adult (18+ years). Each figure was assigned to one of eight imaging modalities. A random sample of 1,000 images was examined to measure accuracy of the metadata. The patient's age was identified in 58,994 cases (63%), and the patient's sex was identified in 58,427 cases (62%). An imaging modality was assigned to 80,402 (85%) of the figures. Based on the 1,000 sampled cases, recall values for age, sex, and imaging modality were 97.2%, 99.7%, and 86.4%, respectively. Precision values for age, sex, and imaging modality were 100%, 100%, and 97.2%, respectively. Automated techniques can accurately discover age, sex, and imaging modality metadata from captions of figures published in radiology journals. The metadata can be used to dynamically filter queries for an image search engine.

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Mesh:

Year:  2007        PMID: 17558534      PMCID: PMC3043832          DOI: 10.1007/s10278-007-9036-5

Source DB:  PubMed          Journal:  J Digit Imaging        ISSN: 0897-1889            Impact factor:   4.056


  8 in total

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Authors:  Patricia A Goede; Jason R Lauman; Christopher Cochella; Gregory L Katzman; David A Morton; Kurt H Albertine
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2.  A reference data set for the evaluation of medical image retrieval systems.

Authors:  Henning Müller; Antoine Rosset; Jean-Paul Vallée; François Terrier; Antoine Geissbuhler
Journal:  Comput Med Imaging Graph       Date:  2004-09       Impact factor: 4.790

3.  Content-based image retrieval for large biomedical image archives.

Authors:  Sameer Antani; L Rodney Long; George R Thoma
Journal:  Stud Health Technol Inform       Date:  2004

Review 4.  A survey of current work in biomedical text mining.

Authors:  Aaron M Cohen; William R Hersh
Journal:  Brief Bioinform       Date:  2005-03       Impact factor: 11.622

5.  Advancing biomedical image retrieval: development and analysis of a test collection.

Authors:  William R Hersh; Henning Müller; Jeffery R Jensen; Jianji Yang; Paul N Gorman; Patrick Ruch
Journal:  J Am Med Inform Assoc       Date:  2006-06-23       Impact factor: 4.497

6.  Evaluation of biomedical text-mining systems: lessons learned from information retrieval.

Authors:  William Hersh
Journal:  Brief Bioinform       Date:  2005-12       Impact factor: 11.622

7.  GoldMiner: a radiology image search engine.

Authors:  Charles E Kahn; Cheng Thao
Journal:  AJR Am J Roentgenol       Date:  2007-06       Impact factor: 3.959

8.  caGrid: design and implementation of the core architecture of the cancer biomedical informatics grid.

Authors:  Joel Saltz; Scott Oster; Shannon Hastings; Stephen Langella; Tahsin Kurc; William Sanchez; Manav Kher; Arumani Manisundaram; Krishnakant Shanbhag; Peter Covitz
Journal:  Bioinformatics       Date:  2006-06-09       Impact factor: 6.937

  8 in total
  3 in total

1.  Automated semantic indexing of figure captions to improve radiology image retrieval.

Authors:  Charles E Kahn; Daniel L Rubin
Journal:  J Am Med Inform Assoc       Date:  2009-03-04       Impact factor: 4.497

2.  Accurate determination of imaging modality using an ensemble of text- and image-based classifiers.

Authors:  Charles E Kahn; Jayashree Kalpathy-Cramer; Cesar A Lam; Christina E Eldredge
Journal:  J Digit Imaging       Date:  2012-02       Impact factor: 4.056

3.  Caption-based topical descriptors for microscopic images as published in academic papers.

Authors:  Sujin Kim; Shannon Lamkin; Pam Duncan
Journal:  Health Info Libr J       Date:  2010-09
  3 in total

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