Literature DB >> 16798799

A model for the circadian rhythm of cyanobacteria that maintains oscillation without gene expression.

Gen Kurosawa1, Kazuyuki Aihara, Yoh Iwasa.   

Abstract

An intriguing property of the cyanobacterial circadian clock is that endogenous rhythm persists when protein abundances are kept constant either in the presence of translation and transcription inhibitors or in the constant dark condition. Here we propose a regulatory mechanism of KaiC phosphorylation for the generation of circadian oscillations in cyanobacteria. In the model, clock proteins KaiA and KaiB are assumed to have multiple states, regulating the KaiC phosphorylation process. The model can explain 1), the sustained oscillation of gene expression and protein abundance when the expression of the kaiBC gene is regulated by KaiC protein, and 2), the sustained oscillation of phosphorylated KaiC when transcription and translation processes are inhibited and total protein abundance is fixed. Results of this work suggest that KaiA and KaiB strengthen the nonlinearity of KaiC phosphorylation, thereby promoting the circadian rhythm in cyanobacteria.

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Year:  2006        PMID: 16798799      PMCID: PMC1557573          DOI: 10.1529/biophysj.105.076554

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  30 in total

1.  Circadian clock-protein expression in cyanobacteria: rhythms and phase setting.

Authors:  Y Xu; T Mori; C H Johnson
Journal:  EMBO J       Date:  2000-07-03       Impact factor: 11.598

Review 2.  Time zones: a comparative genetics of circadian clocks.

Authors:  M W Young; S A Kay
Journal:  Nat Rev Genet       Date:  2001-09       Impact factor: 53.242

3.  Robust oscillations within the interlocked feedback model of Drosophila circadian rhythm.

Authors:  H R Ueda; M Hagiwara; H Kitano
Journal:  J Theor Biol       Date:  2001-06-21       Impact factor: 2.691

4.  A reduced model clarifies the role of feedback loops and time delays in the Drosophila circadian oscillator.

Authors:  Paul Smolen; Douglas A Baxter; John H Byrne
Journal:  Biophys J       Date:  2002-11       Impact factor: 4.033

5.  Saturation of enzyme kinetics in circadian clock models.

Authors:  Gen Kurosawa; Yoh Iwasa
Journal:  J Biol Rhythms       Date:  2002-12       Impact factor: 3.182

6.  Structure and function from the circadian clock protein KaiA of Synechococcus elongatus: a potential clock input mechanism.

Authors:  Stanly B Williams; Ioannis Vakonakis; Susan S Golden; Andy C LiWang
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-15       Impact factor: 11.205

7.  Comparative study of circadian clock models, in search of processes promoting oscillation.

Authors:  Gen Kurosawa; Atsushi Mochizuki; Yoh Iwasa
Journal:  J Theor Biol       Date:  2002-05-21       Impact factor: 2.691

8.  KaiA-stimulated KaiC phosphorylation in circadian timing loops in cyanobacteria.

Authors:  Hideo Iwasaki; Taeko Nishiwaki; Yohko Kitayama; Masato Nakajima; Takao Kondo
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-21       Impact factor: 11.205

9.  Reconstitution of circadian oscillation of cyanobacterial KaiC phosphorylation in vitro.

Authors:  Masato Nakajima; Keiko Imai; Hiroshi Ito; Taeko Nishiwaki; Yoriko Murayama; Hideo Iwasaki; Tokitaka Oyama; Takao Kondo
Journal:  Science       Date:  2005-04-15       Impact factor: 47.728

Review 10.  Limit cycle models for circadian rhythms based on transcriptional regulation in Drosophila and Neurospora.

Authors:  J C Leloup; D Gonze; A Goldbeter
Journal:  J Biol Rhythms       Date:  1999-12       Impact factor: 3.182

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  21 in total

1.  Synchronization of circadian oscillation of phosphorylation level of KaiC in vitro.

Authors:  Tetsuro Nagai; Tomoki P Terada; Masaki Sasai
Journal:  Biophys J       Date:  2010-06-02       Impact factor: 4.033

2.  Ordered phosphorylation governs oscillation of a three-protein circadian clock.

Authors:  Michael J Rust; Joseph S Markson; William S Lane; Daniel S Fisher; Erin K O'Shea
Journal:  Science       Date:  2007-10-04       Impact factor: 47.728

3.  An allosteric model of circadian KaiC phosphorylation.

Authors:  Jeroen S van Zon; David K Lubensky; Pim R H Altena; Pieter Rein ten Wolde
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-25       Impact factor: 11.205

Review 4.  The molecular clockwork of a protein-based circadian oscillator.

Authors:  Joseph S Markson; Erin K O'Shea
Journal:  FEBS Lett       Date:  2009-12-17       Impact factor: 4.124

5.  Non-sinusoidal Waveform in Temperature-Compensated Circadian Oscillations.

Authors:  Shingo Gibo; Gen Kurosawa
Journal:  Biophys J       Date:  2019-01-15       Impact factor: 4.033

Review 6.  The itty-bitty time machine genetics of the cyanobacterial circadian clock.

Authors:  Shannon R Mackey; Susan S Golden; Jayna L Ditty
Journal:  Adv Genet       Date:  2011       Impact factor: 1.944

7.  Deciphering the Dynamics of Interlocked Feedback Loops in a Model of the Mammalian Circadian Clock.

Authors:  Dorjsuren Battogtokh; John J Tyson
Journal:  Biophys J       Date:  2018-10-11       Impact factor: 4.033

Review 8.  The cyanobacterial circadian system: from biophysics to bioevolution.

Authors:  Carl Hirschie Johnson; Phoebe L Stewart; Martin Egli
Journal:  Annu Rev Biophys       Date:  2011       Impact factor: 12.981

Review 9.  A cyanobacterial circadian clockwork.

Authors:  Carl Hirschie Johnson; Tetsuya Mori; Yao Xu
Journal:  Curr Biol       Date:  2008-09-09       Impact factor: 10.834

10.  Circadian KaiC phosphorylation: a multi-layer network.

Authors:  Congxin Li; Xiaofang Chen; Pengye Wang; Weichi Wang
Journal:  PLoS Comput Biol       Date:  2009-11-20       Impact factor: 4.475

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