Literature DB >> 16788909

Electronic structure of iron(II)-porphyrin nitroxyl complexes: molecular mechanism of fungal nitric oxide reductase (P450nor).

Nicolai Lehnert1, V K K Praneeth, Florian Paulat.   

Abstract

Density functional calculations are employed to investigate key intermediates of the catalytic cycle of fungal nitric oxide reductase (P450nor). The formal Fe(II)-nitroxyl species Fe(II)--NO/(-) can principally exist in the two spin-states S = 0 and S = 1. In the S = 0 case, a very covalent Fe--NO sigma bond is present, which leads to an electronic structure description that is actually intermediate between Fe(I)--NO and Fe(II)--NO(-). In contrast, the S = 1 case shows a ferrous Fe(II)--NO complex with the extra electron being stored in the pi system of the porphyrin ligand. Importantly, the Fe(II)--NO/(-) species are very basic. The electronic structures and spectroscopic properties of the corresponding N- and O-protonated forms are very different, and unequivocally show that the Mb-HNO adduct (Mb-Myoglobin) prepared by farmer and coworkers is in fact N-protonated. The presence of an axial thiolate ligand enables a second protonation leading to the corresponding Fe(IV)--NHOH- species, which is identified with the catalytically active intermediate I of P450nor. This species reacts with a second molecule of NO by initial electron transfer from NO to Fe(IV) followed by addition of NO+ forming an N--N bond. This is accompanied by an energetically very favorable intramolecular proton transfer leading to the generation of a quite stable Fe(III)--N(OH)(NOH) complex. This way, the enzyme is able to produce dimerized HNO under very controlled conditions and to prevent loss of this ligand from Fe(III). The energetically disfavoured tautomer Fe(III)--N(OH2)(NO) is the catalytically productive species that spontaneously cleaves the N--OH2 bond forming N2O and H2O in a highly exergonic reaction.

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Year:  2006        PMID: 16788909     DOI: 10.1002/jcc.20400

Source DB:  PubMed          Journal:  J Comput Chem        ISSN: 0192-8651            Impact factor:   3.376


  20 in total

Review 1.  Fungal denitrification and nitric oxide reductase cytochrome P450nor.

Authors:  Hirofumi Shoun; Shinya Fushinobu; Li Jiang; Sang-Wan Kim; Takayoshi Wakagi
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2012-05-05       Impact factor: 6.237

2.  Linkage isomerization in heme-NOx compounds: understanding NO, nitrite, and hyponitrite interactions with iron porphyrins.

Authors:  Nan Xu; Jun Yi; George B Richter-Addo
Journal:  Inorg Chem       Date:  2010-07-19       Impact factor: 5.165

3.  Nuclear resonance vibrational spectroscopy applied to [Fe(OEP)(NO)]: the vibrational assignments of five-coordinate ferrous heme-nitrosyls and implications for electronic structure.

Authors:  Nicolai Lehnert; Mary Grace I Galinato; Florian Paulat; George B Richter-Addo; Wolfgang Sturhahn; Nan Xu; Jiyong Zhao
Journal:  Inorg Chem       Date:  2010-05-03       Impact factor: 5.165

4.  A computational analysis of electromerism in hemoprotein Fe(I) models.

Authors:  Radu Silaghi-Dumitrescu; Sergei V Makarov
Journal:  J Biol Inorg Chem       Date:  2010-05-01       Impact factor: 3.358

Review 5.  Biological and Bioinspired Inorganic N-N Bond-Forming Reactions.

Authors:  Christina Ferousi; Sean H Majer; Ida M DiMucci; Kyle M Lancaster
Journal:  Chem Rev       Date:  2020-02-28       Impact factor: 60.622

6.  Nitrosomonas europaea cytochrome P460 is a direct link between nitrification and nitrous oxide emission.

Authors:  Jonathan D Caranto; Avery C Vilbert; Kyle M Lancaster
Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-16       Impact factor: 11.205

7.  HNO-Binding in Heme Proteins: Effects of Iron Oxidation State, Axial Ligand, and Protein Environment.

Authors:  Rahul L Khade; Yuwei Yang; Yelu Shi; Yong Zhang
Journal:  Angew Chem Int Ed Engl       Date:  2016-10-31       Impact factor: 15.336

8.  Heme P460: A (Cross) Link to Nitric Oxide.

Authors:  Rachael E Coleman; Kyle M Lancaster
Journal:  Acc Chem Res       Date:  2020-11-12       Impact factor: 22.384

9.  Oriented single-crystal nuclear resonance vibrational spectroscopy of [Fe(TPP)(MI)(NO)]: quantitative assessment of the trans effect of NO.

Authors:  Nicolai Lehnert; J Timothy Sage; Nathan Silvernail; W Robert Scheidt; E Ercan Alp; Wolfgang Sturhahn; Jiyong Zhao
Journal:  Inorg Chem       Date:  2010-08-02       Impact factor: 5.165

10.  Reductive activation of the heme iron-nitrosyl intermediate in the reaction mechanism of cytochrome c nitrite reductase: a theoretical study.

Authors:  Dmytro Bykov; Frank Neese
Journal:  J Biol Inorg Chem       Date:  2012-03-28       Impact factor: 3.358

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