Literature DB >> 27856762

Nitrosomonas europaea cytochrome P460 is a direct link between nitrification and nitrous oxide emission.

Jonathan D Caranto1, Avery C Vilbert1, Kyle M Lancaster2.   

Abstract

Ammonia oxidizing bacteria (AOB) are major contributors to the emission of nitrous oxide (N2O). It has been proposed that N2O is produced by reduction of NO. Here, we report that the enzyme cytochrome (cyt) P460 from the AOB Nitrosomonas europaea converts hydroxylamine (NH2OH) quantitatively to N2O under anaerobic conditions. Previous literature reported that this enzyme oxidizes NH2OH to nitrite ([Formula: see text]) under aerobic conditions. Although we observe [Formula: see text] formation under aerobic conditions, its concentration is not stoichiometric with the NH2OH concentration. By contrast, under anaerobic conditions, the enzyme uses 4 oxidizing equivalents (eq) to convert 2 eq of NH2OH to N2O. Enzyme kinetics coupled to UV/visible absorption and electron paramagnetic resonance (EPR) spectroscopies support a mechanism in which an FeIII-NH2OH adduct of cyt P460 is oxidized to an {FeNO}6 unit. This species subsequently undergoes nucleophilic attack by a second equivalent of NH2OH, forming the N-N bond of N2O during a bimolecular, rate-determining step. We propose that [Formula: see text] results when nitric oxide (NO) dissociates from the {FeNO}6 intermediate and reacts with dioxygen. Thus, [Formula: see text] is not a direct product of cyt P460 activity. We hypothesize that the cyt P460 oxidation of NH2OH contributes to NO and N2O emissions from nitrifying microorganisms.

Entities:  

Keywords:  bioinorganic chemistry; enzymology; nitric oxide; nitrification; nitrous oxide

Mesh:

Substances:

Year:  2016        PMID: 27856762      PMCID: PMC5187719          DOI: 10.1073/pnas.1611051113

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  36 in total

1.  Selective one-electron reduction of Nitrosomonas europaea hydroxylamine oxidoreductase with nitric oxide.

Authors:  Maria Zulema Cabail; A Andrew Pacheco
Journal:  Inorg Chem       Date:  2003-01-27       Impact factor: 5.165

2.  Cytochrome P-460 of Nitrosomonas europaea: further purification and further characterization.

Authors:  M Numata; T Saito; T Yamazaki; Y Fukumori; T Yamanaka
Journal:  J Biochem       Date:  1990-12       Impact factor: 3.387

3.  Hydroxylamine oxidoreductase of Nitrosomonas. Production of nitric oxide from hydroxylamine.

Authors:  A B Hooper; K R Terry
Journal:  Biochim Biophys Acta       Date:  1979-11-09

4.  Spectroscopic characterization of the NO adduct of hydroxylamine oxidoreductase.

Authors:  Michael P Hendrich; Anup K Upadhyay; Jeanne Riga; David M Arciero; Alan B Hooper
Journal:  Biochemistry       Date:  2002-04-09       Impact factor: 3.162

5.  N2O production rate of an enriched ammonia-oxidising bacteria culture exponentially correlates to its ammonia oxidation rate.

Authors:  Yingyu Law; Bing-Jie Ni; Paul Lant; Zhiguo Yuan
Journal:  Water Res       Date:  2012-04-03       Impact factor: 11.236

6.  Mössbauer, EPR, and optical studies of the P-460 center of hydroxylamine oxidoreductase from Nitrosomonas. A ferrous heme with an unusually large quadrupole splitting.

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Journal:  J Biol Chem       Date:  1984-06-10       Impact factor: 5.157

7.  In vitro activation of ammonia monooxygenase from Nitrosomonas europaea by copper.

Authors:  S A Ensign; M R Hyman; D J Arp
Journal:  J Bacteriol       Date:  1993-04       Impact factor: 3.490

Review 8.  The chemistry and biochemistry of heme c: functional bases for covalent attachment.

Authors:  Sarah E J Bowman; Kara L Bren
Journal:  Nat Prod Rep       Date:  2008-09-09       Impact factor: 13.423

9.  The crystal structure of cytochrome P460 of Nitrosomonas europaea reveals a novel cytochrome fold and heme-protein cross-link.

Authors:  Arwen R Pearson; Bradley O Elmore; Cheng Yang; Joseph D Ferrara; Alan B Hooper; Carrie M Wilmot
Journal:  Biochemistry       Date:  2007-06-21       Impact factor: 3.162

10.  The primary structure of cytochrome P460 of Nitrosomonas europaea: presence of a c-heme binding motif.

Authors:  D J Bergmann; A B Hooper
Journal:  FEBS Lett       Date:  1994-10-24       Impact factor: 4.124

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  29 in total

1.  Nitric oxide is an obligate bacterial nitrification intermediate produced by hydroxylamine oxidoreductase.

Authors:  Jonathan D Caranto; Kyle M Lancaster
Journal:  Proc Natl Acad Sci U S A       Date:  2017-07-17       Impact factor: 11.205

Review 2.  Beyond fossil fuel-driven nitrogen transformations.

Authors:  Jingguang G Chen; Richard M Crooks; Lance C Seefeldt; Kara L Bren; R Morris Bullock; Marcetta Y Darensbourg; Patrick L Holland; Brian Hoffman; Michael J Janik; Anne K Jones; Mercouri G Kanatzidis; Paul King; Kyle M Lancaster; Sergei V Lymar; Peter Pfromm; William F Schneider; Richard R Schrock
Journal:  Science       Date:  2018-05-25       Impact factor: 47.728

3.  Upon further analysis, neither cytochrome c554 from Nitrosomonas europaea nor its F156A variant display NO reductase activity, though both proteins bind nitric oxide reversibly.

Authors:  Jennifer M McGarry; A Andrew Pacheco
Journal:  J Biol Inorg Chem       Date:  2018-06-26       Impact factor: 3.358

4.  Is there a pathway for N2O production from hydroxylamine oxidoreductase in ammonia-oxidizing bacteria?

Authors:  Corey J White; Nicolai Lehnert
Journal:  Proc Natl Acad Sci U S A       Date:  2016-12-13       Impact factor: 11.205

Review 5.  Biological and Bioinspired Inorganic N-N Bond-Forming Reactions.

Authors:  Christina Ferousi; Sean H Majer; Ida M DiMucci; Kyle M Lancaster
Journal:  Chem Rev       Date:  2020-02-28       Impact factor: 60.622

6.  Organometallic and radical intermediates reveal mechanism of diphthamide biosynthesis.

Authors:  Min Dong; Venkatesan Kathiresan; Michael K Fenwick; Andrew T Torelli; Yang Zhang; Jonathan D Caranto; Boris Dzikovski; Ajay Sharma; Kyle M Lancaster; Jack H Freed; Steven E Ealick; Brian M Hoffman; Hening Lin
Journal:  Science       Date:  2018-03-16       Impact factor: 47.728

7.  Heme P460: A (Cross) Link to Nitric Oxide.

Authors:  Rachael E Coleman; Kyle M Lancaster
Journal:  Acc Chem Res       Date:  2020-11-12       Impact factor: 22.384

8.  The Eponymous Cofactors in Cytochrome P460s from Ammonia-Oxidizing Bacteria Are Iron Porphyrinoids Whose Macrocycles Are Dibasic.

Authors:  Meghan A Smith; Kyle M Lancaster
Journal:  Biochemistry       Date:  2017-12-06       Impact factor: 3.162

Review 9.  Methanotrophs: Discoveries, Environmental Relevance, and a Perspective on Current and Future Applications.

Authors:  Simon Guerrero-Cruz; Annika Vaksmaa; Marcus A Horn; Helge Niemann; Maite Pijuan; Adrian Ho
Journal:  Front Microbiol       Date:  2021-05-14       Impact factor: 5.640

Review 10.  Effects of Organic Fertilizers on the Soil Microorganisms Responsible for N2O Emissions: A Review.

Authors:  Cristina Lazcano; Xia Zhu-Barker; Charlotte Decock
Journal:  Microorganisms       Date:  2021-05-01
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