Literature DB >> 11604736

Aggregating UMLS semantic types for reducing conceptual complexity.

A T McCray1, A Burgun, O Bodenreider.   

Abstract

The conceptual complexity of a domain can make it difficult for users of information systems to comprehend and interact with the knowledge embedded in those systems. The Unified Medical Language System (UMLS) currently integrates over 730,000 biomedical concepts from more than fifty biomedical vocabularies. The UMLS semantic network reduces the complexity of this construct by grouping concepts according to the semantic types that have been assigned to them. For certain purposes, however, an even smaller and coarser-grained set of semantic type groupings may be desirable. In this paper, we discuss our approach to creating such a set. We present six basic principles, and then apply those principles in aggregating the existing 134 semantic types into a set of 15 groupings. We present some of the difficulties we encountered and the consequences of the decisions we have made. We discuss some possible uses of the semantic groups, and we conclude with implications for future work.

Mesh:

Year:  2001        PMID: 11604736      PMCID: PMC4300099     

Source DB:  PubMed          Journal:  Stud Health Technol Inform        ISSN: 0926-9630


  6 in total

1.  Representing the UMLS as an object-oriented database: modeling issues and advantages.

Authors:  H Gu; Y Perl; J Geller; M Halper; L M Liu; J J Cimino
Journal:  J Am Med Inform Assoc       Date:  2000 Jan-Feb       Impact factor: 4.497

2.  An ontological analysis of the UMLS Metathesaurus.

Authors:  D M Pisanelli; A Gangemi; G Steve
Journal:  Proc AMIA Symp       Date:  1998

3.  Dynamic organization of search results using the UMLS.

Authors:  W Pratt
Journal:  Proc AMIA Annu Fall Symp       Date:  1997

4.  Issues in the structuring and acquisition of an ontology for medical language understanding.

Authors:  P Zweigenbaum; B Bachimont; J Bouaud; J Charlet; J F Boisvieux
Journal:  Methods Inf Med       Date:  1995-03       Impact factor: 2.176

5.  Auditing the Unified Medical Language System with semantic methods.

Authors:  J J Cimino
Journal:  J Am Med Inform Assoc       Date:  1998 Jan-Feb       Impact factor: 4.497

6.  Navigating to knowledge.

Authors:  M S Tuttle; W G Cole; D D Sheretz; S J Nelson
Journal:  Methods Inf Med       Date:  1995-03       Impact factor: 2.176

  6 in total
  107 in total

1.  An object-oriented model for representing semantic locality in the UMLS.

Authors:  O Bodenreider
Journal:  Stud Health Technol Inform       Date:  2001

2.  Methods for exploring the semantics of the relationships between co-occurring UMLS concepts.

Authors:  A Burgun; O Bodenreider
Journal:  Stud Health Technol Inform       Date:  2001

3.  Finding UMLS Metathesaurus concepts in MEDLINE.

Authors:  Suresh Srinivasan; Thomas C Rindflesch; William T Hole; Alan R Aronson; James G Mork
Journal:  Proc AMIA Symp       Date:  2002

4.  Exploring semantic groups through visual approaches.

Authors:  Olivier Bodenreider; Alexa T McCray
Journal:  J Biomed Inform       Date:  2003-12       Impact factor: 6.317

5.  Strength in numbers: exploring redundancy in hierarchical relations across biomedical terminologies.

Authors:  Olivier Bodenreider
Journal:  AMIA Annu Symp Proc       Date:  2003

6.  Interpreting hypernymic propositions in an online medical encyclopedia.

Authors:  Marcelo Fiszman; Thomas C Rindflesch; Halil Kilicoglu
Journal:  AMIA Annu Symp Proc       Date:  2003

7.  Integrating a hypernymic proposition interpreter into a semantic processor for biomedical texts.

Authors:  Marcelo Fiszman; Thomas C Rindflesch; Halil Kilicoglu
Journal:  AMIA Annu Symp Proc       Date:  2003

8.  A hybrid knowledge-based and data-driven approach to identifying semantically similar concepts.

Authors:  Rimma Pivovarov; Noémie Elhadad
Journal:  J Biomed Inform       Date:  2012-01-25       Impact factor: 6.317

9.  The UMLS-CORE project: a study of the problem list terminologies used in large healthcare institutions.

Authors:  Kin Wah Fung; Clement McDonald; Suresh Srinivasan
Journal:  J Am Med Inform Assoc       Date:  2010 Nov-Dec       Impact factor: 4.497

Review 10.  Development of an informatics infrastructure for data exchange of biomolecular simulations: Architecture, data models and ontology.

Authors:  J C Thibault; D R Roe; K Eilbeck; T E Cheatham; J C Facelli
Journal:  SAR QSAR Environ Res       Date:  2015-09-21       Impact factor: 3.000

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