Literature DB >> 17947619

Identifying smokers with a medical extraction system.

Cheryl Clark1, Kathleen Good, Lesley Jezierny, Melissa Macpherson, Brian Wilson, Urszula Chajewska.   

Abstract

The Clinical Language Understanding group at Nuance Communications has developed a medical information extraction system that combines a rule-based extraction engine with machine learning algorithms to identify and categorize references to patient smoking in clinical reports. The extraction engine identifies smoking references; documents that contain no smoking references are classified as UNKNOWN. For the remaining documents, the extraction engine uses linguistic analysis to associate features such as status and time to smoking mentions. Machine learning is used to classify the documents based on these features. This approach shows overall accuracy in the 90s on all data sets used. Classification using engine-generated and word-based features outperforms classification using only word-based features for all data sets, although the difference gets smaller as the data set size increases. These techniques could be applied to identify other risk factors, such as drug and alcohol use, or a family history of a disease.

Entities:  

Mesh:

Year:  2007        PMID: 17947619      PMCID: PMC2274874          DOI: 10.1197/jamia.M2442

Source DB:  PubMed          Journal:  J Am Med Inform Assoc        ISSN: 1067-5027            Impact factor:   4.497


  4 in total

1.  Automated encoding of clinical documents based on natural language processing.

Authors:  Carol Friedman; Lyudmila Shagina; Yves Lussier; George Hripcsak
Journal:  J Am Med Inform Assoc       Date:  2004-06-07       Impact factor: 4.497

2.  Extracting diagnoses from discharge summaries.

Authors:  William Long
Journal:  AMIA Annu Symp Proc       Date:  2005

3.  Extracting principal diagnosis, co-morbidity and smoking status for asthma research: evaluation of a natural language processing system.

Authors:  Qing T Zeng; Sergey Goryachev; Scott Weiss; Margarita Sordo; Shawn N Murphy; Ross Lazarus
Journal:  BMC Med Inform Decis Mak       Date:  2006-07-26       Impact factor: 2.796

4.  Fever detection from free-text clinical records for biosurveillance.

Authors:  Wendy W Chapman; John N Dowling; Michael M Wagner
Journal:  J Biomed Inform       Date:  2004-04       Impact factor: 6.317

  4 in total
  32 in total

1.  MITRE system for clinical assertion status classification.

Authors:  Cheryl Clark; John Aberdeen; Matt Coarr; David Tresner-Kirsch; Ben Wellner; Alexander Yeh; Lynette Hirschman
Journal:  J Am Med Inform Assoc       Date:  2011-04-22       Impact factor: 4.497

2.  Mayo clinic smoking status classification system: extensions and improvements.

Authors:  Sunghwan Sohn; Guergana K Savova
Journal:  AMIA Annu Symp Proc       Date:  2009-11-14

3.  Comparison of UMLS terminologies to identify risk of heart disease using clinical notes.

Authors:  Chaitanya Shivade; Pranav Malewadkar; Eric Fosler-Lussier; Albert M Lai
Journal:  J Biomed Inform       Date:  2015-09-12       Impact factor: 6.317

4.  Risk factor detection for heart disease by applying text analytics in electronic medical records.

Authors:  Manabu Torii; Jung-Wei Fan; Wei-Li Yang; Theodore Lee; Matthew T Wiley; Daniel S Zisook; Yang Huang
Journal:  J Biomed Inform       Date:  2015-08-14       Impact factor: 6.317

5.  Natural language processing framework to assess clinical conditions.

Authors:  Henry Ware; Charles J Mullett; V Jagannathan
Journal:  J Am Med Inform Assoc       Date:  2009-04-23       Impact factor: 4.497

6.  A rule-based approach for identifying obesity and its comorbidities in medical discharge summaries.

Authors:  Ninad K Mishra; David M Cummo; James J Arnzen; Jason Bonander
Journal:  J Am Med Inform Assoc       Date:  2009-04-23       Impact factor: 4.497

7.  eQuality for all: Extending automated quality measurement of free text clinical narratives.

Authors:  Steven H Brown; Peter L Elkin; S Trent Rosenbloom; Elliot Fielstein; Ted Speroff
Journal:  AMIA Annu Symp Proc       Date:  2008-11-06

8.  Use of semantic features to classify patient smoking status.

Authors:  Patrick J McCormick; Noémie Elhadad; Peter D Stetson
Journal:  AMIA Annu Symp Proc       Date:  2008-11-06

9.  Defining a comprehensive verotype using electronic health records for personalized medicine.

Authors:  Mary Regina Boland; George Hripcsak; Yufeng Shen; Wendy K Chung; Chunhua Weng
Journal:  J Am Med Inform Assoc       Date:  2013-09-03       Impact factor: 4.497

10.  Automatic lymphoma classification with sentence subgraph mining from pathology reports.

Authors:  Yuan Luo; Aliyah R Sohani; Ephraim P Hochberg; Peter Szolovits
Journal:  J Am Med Inform Assoc       Date:  2014-01-15       Impact factor: 4.497

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.