Literature DB >> 16724112

Two conformations of a crystalline human tRNA synthetase-tRNA complex: implications for protein synthesis.

Xiang-Lei Yang1, Francella J Otero, Karla L Ewalt, Jianming Liu, Manal A Swairjo, Caroline Köhrer, Uttam L RajBhandary, Robert J Skene, Duncan E McRee, Paul Schimmel.   

Abstract

Aminoacylation of tRNA is the first step of protein synthesis. Here, we report the co-crystal structure of human tryptophanyl-tRNA synthetase and tRNATrp. This enzyme is reported to interact directly with elongation factor 1alpha, which carries charged tRNA to the ribosome. Crystals were generated from a 50/50% mixture of charged and uncharged tRNATrp. These crystals captured two conformations of the complex, which are nearly identical with respect to the protein and a bound tryptophan. They are distinguished by the way tRNA is bound. In one, uncharged tRNA is bound across the dimer, with anticodon and acceptor stem interacting with separate subunits. In this cross-dimer tRNA complex, the class I enzyme has a class II-like tRNA binding mode. This structure accounts for biochemical investigations of human TrpRS, including species-specific charging. In the other conformation, presumptive aminoacylated tRNA is bound only by the anticodon, the acceptor stem being free and having space to interact precisely with EF-1alpha, suggesting that the product of aminoacylation can be directly handed off to EF-1alpha for the next step of protein synthesis.

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Year:  2006        PMID: 16724112      PMCID: PMC1500858          DOI: 10.1038/sj.emboj.7601154

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  66 in total

1.  Structural basis for nucleotide exchange and competition with tRNA in the yeast elongation factor complex eEF1A:eEF1Balpha.

Authors:  G R Andersen; L Pedersen; L Valente; I Chatterjee; T G Kinzy; M Kjeldgaard; J Nyborg
Journal:  Mol Cell       Date:  2000-11       Impact factor: 17.970

2.  tRNA-like recognition of group I introns by a tyrosyl-tRNA synthetase.

Authors:  Christopher A Myers; Birte Kuhla; Stephen Cusack; Alan M Lambowitz
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-19       Impact factor: 11.205

Review 3.  Functional expansion of aminoacyl-tRNA synthetases and their interacting factors: new perspectives on housekeepers.

Authors:  Sang Gyu Park; Karla L Ewalt; Sunghoon Kim
Journal:  Trends Biochem Sci       Date:  2005-10       Impact factor: 13.807

4.  Aminoacylation complex structures of leucyl-tRNA synthetase and tRNALeu reveal two modes of discriminator-base recognition.

Authors:  Ryuya Fukunaga; Shigeyuki Yokoyama
Journal:  Nat Struct Mol Biol       Date:  2005-09-11       Impact factor: 15.369

Review 5.  Recent developments for the efficient crystallographic refinement of macromolecular structures.

Authors:  A T Brünger; P D Adams; L M Rice
Journal:  Curr Opin Struct Biol       Date:  1998-10       Impact factor: 6.809

6.  Interaction network of human aminoacyl-tRNA synthetases and subunits of elongation factor 1 complex.

Authors:  Jong Sang Lee; Sang Gyu Park; Heonyong Park; Wongi Seol; Sangwon Lee; Sunghoon Kim
Journal:  Biochem Biophys Res Commun       Date:  2002-02-15       Impact factor: 3.575

7.  A human aminoacyl-tRNA synthetase as a regulator of angiogenesis.

Authors:  Keisuke Wakasugi; Bonnie M Slike; John Hood; Atsushi Otani; Karla L Ewalt; Martin Friedlander; David A Cheresh; Paul Schimmel
Journal:  Proc Natl Acad Sci U S A       Date:  2002-01-02       Impact factor: 11.205

8.  Recognition by tryptophanyl-tRNA synthetases of discriminator base on tRNATrp from three biological domains.

Authors:  Qing Guo; Qingguo Gong; Ka-Lok Tong; Bente Vestergaard; Annie Costa; Jean Desgres; Mansim Wong; Henri Grosjean; Guang Zhu; J Tze-Fei Wong; Hong Xue
Journal:  J Biol Chem       Date:  2002-02-07       Impact factor: 5.157

9.  Functional interaction of mammalian valyl-tRNA synthetase with elongation factor EF-1alpha in the complex with EF-1H.

Authors:  B S Negrutskii; V F Shalak; P Kerjan; A V El'skaya; M Mirande
Journal:  J Biol Chem       Date:  1999-02-19       Impact factor: 5.157

10.  The Pfam protein families database.

Authors:  Alex Bateman; Ewan Birney; Lorenzo Cerruti; Richard Durbin; Laurence Etwiller; Sean R Eddy; Sam Griffiths-Jones; Kevin L Howe; Mhairi Marshall; Erik L L Sonnhammer
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

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  33 in total

1.  Adaptation to tRNA acceptor stem structure by flexible adjustment in the catalytic domain of class I tRNA synthetases.

Authors:  Cuiping Liu; Jeffrey M Sanders; John M Pascal; Ya-Ming Hou
Journal:  RNA       Date:  2011-12-19       Impact factor: 4.942

2.  Trp-tRNA synthetase bridges DNA-PKcs to PARP-1 to link IFN-γ and p53 signaling.

Authors:  Mathew Sajish; Quansheng Zhou; Shuji Kishi; Delgado M Valdez; Mili Kapoor; Min Guo; Sunhee Lee; Sunghoon Kim; Xiang-Lei Yang; Paul Schimmel
Journal:  Nat Chem Biol       Date:  2012-04-15       Impact factor: 15.040

3.  Comparison of histidine recognition in human and trypanosomatid histidyl-tRNA synthetases.

Authors:  Cho Yeow Koh; Allan B Wetzel; Will J de van der Schueren; Wim G J Hol
Journal:  Biochimie       Date:  2014-08-20       Impact factor: 4.079

4.  Human tryptophanyl-tRNA synthetase is switched to a tRNA-dependent mode for tryptophan activation by mutations at V85 and I311.

Authors:  Li-Tao Guo; Xiang-Long Chen; Bo-Tao Zhao; Yi Shi; Wei Li; Hong Xue; You-Xin Jin
Journal:  Nucleic Acids Res       Date:  2007-08-28       Impact factor: 16.971

5.  Divergent regulation of protein synthesis in the cytosol and endoplasmic reticulum compartments of mammalian cells.

Authors:  Samuel B Stephens; Christopher V Nicchitta
Journal:  Mol Biol Cell       Date:  2007-12-12       Impact factor: 4.138

Review 6.  Aminoacyl-tRNA synthetase complexes: molecular multitasking revealed.

Authors:  Corinne D Hausmann; Michael Ibba
Journal:  FEMS Microbiol Rev       Date:  2008-06-03       Impact factor: 16.408

Review 7.  Emergence and evolution.

Authors:  Tammy J Bullwinkle; Michael Ibba
Journal:  Top Curr Chem       Date:  2014

8.  Crystal structures of Saccharomyces cerevisiae tryptophanyl-tRNA synthetase: new insights into the mechanism of tryptophan activation and implications for anti-fungal drug design.

Authors:  Minyun Zhou; Xianchi Dong; Ning Shen; Chen Zhong; Jianping Ding
Journal:  Nucleic Acids Res       Date:  2010-01-31       Impact factor: 16.971

9.  Structure of a tryptophanyl-tRNA synthetase containing an iron-sulfur cluster.

Authors:  Gye Won Han; Xiang Lei Yang; Daniel McMullan; Yeeting E Chong; S Sri Krishna; Christopher L Rife; Dana Weekes; Scott M Brittain; Polat Abdubek; Eileen Ambing; Tamara Astakhova; Herbert L Axelrod; Dennis Carlton; Jonathan Caruthers; Hsiu Ju Chiu; Thomas Clayton; Lian Duan; Julie Feuerhelm; Joanna C Grant; Slawomir K Grzechnik; Lukasz Jaroszewski; Kevin K Jin; Heath E Klock; Mark W Knuth; Abhinav Kumar; David Marciano; Mitchell D Miller; Andrew T Morse; Edward Nigoghossian; Linda Okach; Jessica Paulsen; Ron Reyes; Henry van den Bedem; Aprilfawn White; Guenter Wolf; Qingping Xu; Keith O Hodgson; John Wooley; Ashley M Deacon; Adam Godzik; Scott A Lesley; Marc André Elsliger; Paul Schimmel; Ian A Wilson
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-09-23

10.  Resampling and editing of mischarged tRNA prior to translation elongation.

Authors:  Jiqiang Ling; Byung Ran So; Srujana S Yadavalli; Hervé Roy; Shinichiro Shoji; Kurt Fredrick; Karin Musier-Forsyth; Michael Ibba
Journal:  Mol Cell       Date:  2009-03-13       Impact factor: 17.970

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