Literature DB >> 9818265

Recent developments for the efficient crystallographic refinement of macromolecular structures.

A T Brünger1, P D Adams, L M Rice.   

Abstract

Macromolecular crystallographic refinement has recently been made more efficient by the use of cross-validated maximum likelihood targets and torsion-angle molecular dynamics simulated annealing. In combination with automated model building methods, the amount of manual intervention required to complete and refine a structure is greatly reduced.

Mesh：

Substances：

Year:  1998        PMID： 9818265     DOI： 10.1016/s0959-440x(98)80152-8

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN： 0959-440X            Impact factor:   6.809


  28 in total

1.  Modeling of the structural features of integral-membrane proteins reverse-environment prediction of integral membrane protein structure (REPIMPS).

Authors:  S Dastmalchi; M B Morris; W B Church
Journal:  Protein Sci       Date:  2001-08       Impact factor: 6.725

2.  Crystal structure of RlmAI: implications for understanding the 23S rRNA G745/G748-methylation at the macrolide antibiotic-binding site.

Authors:  Kalyan Das; Thomas Acton; Yiwen Chiang; Lydia Shih; Eddy Arnold; Gaetano T Montelione
Journal:  Proc Natl Acad Sci U S A       Date:  2004-03-03       Impact factor: 11.205

3.  Two conformations of a crystalline human tRNA synthetase-tRNA complex: implications for protein synthesis.

Authors:  Xiang-Lei Yang; Francella J Otero; Karla L Ewalt; Jianming Liu; Manal A Swairjo; Caroline Köhrer; Uttam L RajBhandary; Robert J Skene; Duncan E McRee; Paul Schimmel
Journal:  EMBO J       Date:  2006-05-25       Impact factor: 11.598

4.  Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm.

Authors:  Xiangan Liu; Wen Jiang; Joanita Jakana; Wah Chiu
Journal:  J Struct Biol       Date:  2007-07-06       Impact factor: 2.867

5.  Exploring structural variability in X-ray crystallographic models using protein local optimization by torsion-angle sampling.

Authors:  Jennifer L Knight; Zhiyong Zhou; Emilio Gallicchio; Daniel M Himmel; Richard A Friesner; Eddy Arnold; Ronald M Levy
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2008-03-19

6.  Structure of follicle-stimulating hormone in complex with the entire ectodomain of its receptor.

Authors:  Xuliang Jiang; Heli Liu; Xiaoyan Chen; Po-Han Chen; David Fischer; Venkataraman Sriraman; Henry N Yu; Steve Arkinstall; Xiaolin He
Journal:  Proc Natl Acad Sci U S A       Date:  2012-07-16       Impact factor: 11.205

7.  Structural studies of duck delta2 crystallin mutants provide insight into the role of Thr161 and the 280s loop in catalysis.

Authors:  Liliana M Sampaleanu; Penelope W Codding; Yuri D Lobsanov; May Tsai; G David Smith; Cathy Horvatin; P Lynne Howell
Journal:  Biochem J       Date:  2004-12-01       Impact factor: 3.857

8.  Iodine atoms: a new molecular feature for the design of potent transthyretin fibrillogenesis inhibitors.

Authors:  Teresa Mairal; Joan Nieto; Marta Pinto; Maria Rosário Almeida; Luis Gales; Alfredo Ballesteros; José Barluenga; Juan J Pérez; Jesús T Vázquez; Nuria B Centeno; Maria Joao Saraiva; Ana M Damas; Antoni Planas; Gemma Arsequell; Gregorio Valencia
Journal:  PLoS One       Date:  2009-01-06       Impact factor: 3.240

9.  Crystal structure of the complete integrin alphaVbeta3 ectodomain plus an alpha/beta transmembrane fragment.

Authors:  Jian-Ping Xiong; Bhuvaneshwari Mahalingham; Jose Luis Alonso; Laura Ann Borrelli; Xianliang Rui; Saurabh Anand; Bradley T Hyman; Thomas Rysiok; Dirk Müller-Pompalla; Simon L Goodman; M Amin Arnaout
Journal:  J Cell Biol       Date:  2009-08-24       Impact factor: 10.539

10.  Conformational changes and loose packing promote E. coli Tryptophanase cold lability.

Authors:  Anna Kogan; Garik Y Gdalevsky; Rivka Cohen-Luria; Yehuda Goldgur; Robert S Phillips; Abraham H Parola; Orna Almog
Journal:  BMC Struct Biol       Date:  2009-10-08
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.