Literature DB >> 16701245

Isolation of nucleic acids and cultures from fossil ice and permafrost.

Eske Willerslev1, Anders J Hansen, Hendrik N Poinar.   

Abstract

Owing to their constant low temperatures, glacial ice and permafrost might contain the oldest nucleic acids and microbial cells on Earth, which could prove key to reconstructing past ecosystems and for the planning of missions to other planets. However, recent claims concerning viable cells and microbial nucleic acids obtained from ice- and permafrost cores from hundreds of thousands to millions of years old are not properly authenticated and the findings could be the result of contamination. Here, we discuss the processes that restrict the long-term survival of DNA and/or RNA molecules in ice and permafrost, and highlight sources of contamination that could result in false claims. Additionally, we present a set of precautions, controls and criteria to help ensure that future cultures and sequences are authentic.

Year:  2004        PMID: 16701245     DOI: 10.1016/j.tree.2003.11.010

Source DB:  PubMed          Journal:  Trends Ecol Evol        ISSN: 0169-5347            Impact factor:   17.712


  64 in total

1.  Authenticity of ancient-DNA results: a statistical approach.

Authors:  Matthew Spencer; Christopher J Howe
Journal:  Am J Hum Genet       Date:  2004-06-15       Impact factor: 11.025

2.  Cultivable bacteria from ancient algal mats from the McMurdo Dry Valleys, Antarctica.

Authors:  Doug E Antibus; Laura G Leff; Brenda L Hall; Jenny L Baeseman; Christopher B Blackwood
Journal:  Extremophiles       Date:  2011-11-08       Impact factor: 2.395

3.  Assessing the fidelity of ancient DNA sequences amplified from nuclear genes.

Authors:  Jonas Binladen; Carsten Wiuf; M Thomas P Gilbert; Michael Bunce; Ross Barnett; Greger Larson; Alex D Greenwood; James Haile; Simon Y W Ho; Anders J Hansen; Eske Willerslev
Journal:  Genetics       Date:  2005-11-19       Impact factor: 4.562

4.  Beringian paleoecology inferred from permafrost-preserved fungal DNA.

Authors:  Magnus C Lydolph; Jonas Jacobsen; Peter Arctander; M Thomas P Gilbert; David A Gilichinsky; Anders J Hansen; Eske Willerslev; Lene Lange
Journal:  Appl Environ Microbiol       Date:  2005-02       Impact factor: 4.792

5.  Detecting predation and scavenging by DNA gut-content analysis: a case study using a soil insect predator-prey system.

Authors:  Anita Juen; Michael Traugott
Journal:  Oecologia       Date:  2004-10-29       Impact factor: 3.225

Review 6.  Ancient DNA.

Authors:  Eske Willerslev; Alan Cooper
Journal:  Proc Biol Sci       Date:  2005-01-07       Impact factor: 5.349

7.  Crosslinks rather than strand breaks determine access to ancient DNA sequences from frozen sediments.

Authors:  Anders J Hansen; David L Mitchell; Carsten Wiuf; Lakshmi Paniker; Tina B Brand; Jonas Binladen; David A Gilichinsky; Regin Rønn; Eske Willerslev
Journal:  Genetics       Date:  2006-04-02       Impact factor: 4.562

8.  Fossil genes and microbes in the oldest ice on earth.

Authors:  Kay D Bidle; Sanghoon Lee; David R Marchant; Paul G Falkowski
Journal:  Proc Natl Acad Sci U S A       Date:  2007-08-08       Impact factor: 11.205

Review 9.  Ancient and modern environmental DNA.

Authors:  Mikkel Winther Pedersen; Søren Overballe-Petersen; Luca Ermini; Clio Der Sarkissian; James Haile; Micaela Hellstrom; Johan Spens; Philip Francis Thomsen; Kristine Bohmann; Enrico Cappellini; Ida Bærholm Schnell; Nathan A Wales; Christian Carøe; Paula F Campos; Astrid M Z Schmidt; M Thomas P Gilbert; Anders J Hansen; Ludovic Orlando; Eske Willerslev
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2015-01-19       Impact factor: 6.237

10.  Ancient DNA reveals late survival of mammoth and horse in interior Alaska.

Authors:  James Haile; Duane G Froese; Ross D E Macphee; Richard G Roberts; Lee J Arnold; Alberto V Reyes; Morten Rasmussen; Rasmus Nielsen; Barry W Brook; Simon Robinson; Martina Demuro; M Thomas P Gilbert; Kasper Munch; Jeremy J Austin; Alan Cooper; Ian Barnes; Per Möller; Eske Willerslev
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-17       Impact factor: 11.205

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