Literature DB >> 16681365

Participation of the tRNA A76 hydroxyl groups throughout translation.

Joshua S Weinger1, Scott A Strobel.   

Abstract

The free 2'-3' cis-diol at the 3'-terminus of tRNA provides a unique juxtaposition of functional groups that play critical roles during protein synthesis. The translation process involves universally conserved chemistry at almost every stage of this multistep procedure, and the 2'- and 3'-OHs are in the immediate vicinity of chemistry at each step. The cis-diol contribution affects steps ranging from tRNA aminoacylation to peptide bond formation. The contributions have been studied in assays related to translation over a period that spans at least three decades. In this review, we follow the 2'- and 3'-OHs through the steps of translation and examine the involvement of these critical functional groups.

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Year:  2006        PMID: 16681365      PMCID: PMC2522371          DOI: 10.1021/bi060183n

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  83 in total

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Authors:  F von der Haar; F Cramer
Journal:  FEBS Lett       Date:  1975-08-15       Impact factor: 4.124

Review 2.  Translation: in retrospect and prospect.

Authors:  C R Woese
Journal:  RNA       Date:  2001-08       Impact factor: 4.942

3.  The structural basis of ribosome activity in peptide bond synthesis.

Authors:  P Nissen; J Hansen; N Ban; P B Moore; T A Steitz
Journal:  Science       Date:  2000-08-11       Impact factor: 47.728

4.  The G2447A mutation does not affect ionization of a ribosomal group taking part in peptide bond formation.

Authors:  Malte Beringer; Sarah Adio; Wolfgang Wintermeyer; Marina Rodnina
Journal:  RNA       Date:  2003-08       Impact factor: 4.942

5.  Specific recognition of the 3'-terminal adenosine of tRNAPhe in the exit site of Escherichia coli ribosomes.

Authors:  R Lill; A Lepier; F Schwägele; M Sprinzl; H Vogt; W Wintermeyer
Journal:  J Mol Biol       Date:  1988-10-05       Impact factor: 5.469

6.  Transfer ribonucleic acid-induced hydrolysis of valyladenylate bound to isoleucyl ribonucleic acid synthetase.

Authors:  A N Baldwin; P Berg
Journal:  J Biol Chem       Date:  1966-02-25       Impact factor: 5.157

7.  Inhibition of ribosomal translocation by peptidyl transfer ribonucleic acid analogues.

Authors:  T Wagner; M Sprinzl
Journal:  Biochemistry       Date:  1983-01-04       Impact factor: 3.162

8.  Donor site of ribosomal peptidyltransferase: investigation of substrate specificity using 2'(3')-O-(N-acylaminoacyl)dinucleoside phosphates as models of the 3' terminus of N-acylaminoacyl transfer ribonucleic acid.

Authors:  K Quiggle; G Kumar; T W Ott; E K Ryu; S Chládek
Journal:  Biochemistry       Date:  1981-06-09       Impact factor: 3.162

9.  Slow transacylation of peptidyladenosine allows analysis of the 2'/3'-isomer specificity of peptidyltransferase.

Authors:  M Taiji; S Yokoyama; T Miyazawa
Journal:  Biochemistry       Date:  1985-10-08       Impact factor: 3.162

10.  Binding of the 3' terminus of tRNA to 23S rRNA in the ribosomal exit site actively promotes translocation.

Authors:  R Lill; J M Robertson; W Wintermeyer
Journal:  EMBO J       Date:  1989-12-01       Impact factor: 11.598

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  22 in total

1.  A revised mechanism for (p)ppGpp synthesis by Rel proteins: The critical role of the 2'-OH of GTP.

Authors:  Pratik Rajendra Patil; Neha Vithani; Virender Singh; Ashok Kumar; Balaji Prakash
Journal:  J Biol Chem       Date:  2020-07-21       Impact factor: 5.157

2.  Aminoacylation of tRNA 2'- or 3'-hydroxyl by phosphoseryl- and pyrrolysyl-tRNA synthetases.

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Journal:  FEBS Lett       Date:  2013-09-08       Impact factor: 4.124

Review 3.  Exploring the mechanism of protein synthesis with modified substrates and novel intermediate mimics.

Authors:  Joshua S Weinger; Scott A Strobel
Journal:  Blood Cells Mol Dis       Date:  2006-12-21       Impact factor: 3.039

Review 4.  Large facilities and the evolving ribosome, the cellular machine for genetic-code translation.

Authors:  Ada Yonath
Journal:  J R Soc Interface       Date:  2009-08-05       Impact factor: 4.118

5.  The Proto-Ribosome: an ancient nano-machine for peptide bond formation.

Authors:  Chen Davidovich; Matthew Belousoff; Itai Wekselman; Tal Shapira; Miri Krupkin; Ella Zimmerman; Anat Bashan; Ada Yonath
Journal:  Isr J Chem       Date:  2010-06-18       Impact factor: 3.333

6.  Mechanism of tRNA-dependent editing in translational quality control.

Authors:  Jiqiang Ling; Hervé Roy; Michael Ibba
Journal:  Proc Natl Acad Sci U S A       Date:  2006-12-21       Impact factor: 11.205

Review 7.  Experimental analyses of the chemical dynamics of ribozyme catalysis.

Authors:  Michael E Harris; Adam G Cassano
Journal:  Curr Opin Chem Biol       Date:  2008-10-24       Impact factor: 8.822

8.  RNA-assisted catalysis in a protein enzyme: The 2'-hydroxyl of tRNA(Thr) A76 promotes aminoacylation by threonyl-tRNA synthetase.

Authors:  Anand Minajigi; Christopher S Francklyn
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-07       Impact factor: 11.205

9.  Possible Ancestral Functions of the Genetic and RNA Operational Precodes and the Origin of the Genetic System.

Authors:  Juan A Martínez-Giménez; Rafael Tabares-Seisdedos
Journal:  Orig Life Evol Biosph       Date:  2021-06-07       Impact factor: 1.950

Review 10.  tRNA as an active chemical scaffold for diverse chemical transformations.

Authors:  Christopher S Francklyn; Anand Minajigi
Journal:  FEBS Lett       Date:  2010-01-21       Impact factor: 4.124

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