Literature DB >> 19925795

tRNA as an active chemical scaffold for diverse chemical transformations.

Christopher S Francklyn1, Anand Minajigi.   

Abstract

During protein synthesis, tRNA serves as the intermediary between cognate amino acids and their corresponding RNA trinucleotide codons. Aminoacyl-tRNA is also a biosynthetic precursor and amino acid donor for other macromolecules. AA-tRNAs allow transformations of acidic amino acids into their amide-containing counterparts, and seryl-tRNA(Ser) donates serine for antibiotic synthesis. Aminoacyl-tRNA is also used to cross-link peptidoglycan, to lysinylate the lipid bilayer, and to allow proteolytic turnover via the N-end rule. These alternative functions may signal the use of RNA in early evolution as both a biological scaffold and a catalyst to achieve a wide variety of chemical transformations.

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Year:  2010        PMID: 19925795      PMCID: PMC3241936          DOI: 10.1016/j.febslet.2009.11.045

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  99 in total

1.  Amino acid specificity in translation.

Authors:  Taraka Dale; Olke C Uhlenbeck
Journal:  Trends Biochem Sci       Date:  2005-11-02       Impact factor: 13.807

2.  Unusual resistance of peptidyl transferase to protein extraction procedures.

Authors:  H F Noller; V Hoffarth; L Zimniak
Journal:  Science       Date:  1992-06-05       Impact factor: 47.728

3.  Kinetic discrimination of tRNA identity by the conserved motif 2 loop of a class II aminoacyl-tRNA synthetase.

Authors:  Ethan C Guth; Christopher S Francklyn
Journal:  Mol Cell       Date:  2007-02-23       Impact factor: 17.970

Review 4.  The ribosomal peptidyl transferase.

Authors:  Malte Beringer; Marina V Rodnina
Journal:  Mol Cell       Date:  2007-05-11       Impact factor: 17.970

5.  Biochemical characterization of VlmL, a Seryl-tRNA synthetase encoded by the valanimycin biosynthetic gene cluster.

Authors:  Ram P Garg; Jose M Gonzalez; Ronald J Parry
Journal:  J Biol Chem       Date:  2006-07-20       Impact factor: 5.157

6.  Methanopyrus kandleri glutamyl-tRNA reductase.

Authors:  J Moser; S Lorenz; C Hubschwerlen; A Rompf; D Jahn
Journal:  J Biol Chem       Date:  1999-10-22       Impact factor: 5.157

7.  Identification and characterization of phosphoseryl-tRNA[Ser]Sec kinase.

Authors:  Bradley A Carlson; Xue-Ming Xu; Gregory V Kryukov; Mahadev Rao; Marla J Berry; Vadim N Gladyshev; Dolph L Hatfield
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-18       Impact factor: 11.205

8.  tRNA recognition by glutamyl-tRNA reductase.

Authors:  Lennart Randau; Stefan Schauer; Alexandre Ambrogelly; Juan Carlos Salazar; Jürgen Moser; Shun-ichi Sekine; Shigeyuki Yokoyama; Dieter Söll; Dieter Jahn
Journal:  J Biol Chem       Date:  2004-06-11       Impact factor: 5.157

9.  Isolation, crystallization and preliminary X-ray analysis of the transamidosome, a ribonucleoprotein involved in asparagine formation.

Authors:  Marc Bailly; Mickael Blaise; Bernard Lorber; Soren Thirup; Daniel Kern
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-05-22

10.  delta-Aminolevulinic acid-synthesizing enzymes need an RNA moiety for activity.

Authors:  D D Huang; W Y Wang; S P Gough; C G Kannangara
Journal:  Science       Date:  1984-09-28       Impact factor: 47.728

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  28 in total

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Authors:  Manuel A Ortega; Yue Hao; Qi Zhang; Mark C Walker; Wilfred A van der Donk; Satish K Nair
Journal:  Nature       Date:  2014-10-26       Impact factor: 49.962

2.  Kinetics of tRNA folding monitored by aminoacylation.

Authors:  Hari Bhaskaran; Annia Rodriguez-Hernandez; John J Perona
Journal:  RNA       Date:  2012-01-27       Impact factor: 4.942

Review 3.  tRNA biology charges to the front.

Authors:  Eric M Phizicky; Anita K Hopper
Journal:  Genes Dev       Date:  2010-09-01       Impact factor: 11.361

4.  Homologs of aminoacyl-tRNA synthetases acylate carrier proteins and provide a link between ribosomal and nonribosomal peptide synthesis.

Authors:  Marko Mocibob; Nives Ivic; Silvija Bilokapic; Timm Maier; Marija Luic; Nenad Ban; Ivana Weygand-Durasevic
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-27       Impact factor: 11.205

Review 5.  Non-canonical roles of tRNAs and tRNA mimics in bacterial cell biology.

Authors:  Assaf Katz; Sara Elgamal; Andrei Rajkovic; Michael Ibba
Journal:  Mol Microbiol       Date:  2016-06-28       Impact factor: 3.501

6.  The phylogenomic roots of modern biochemistry: origins of proteins, cofactors and protein biosynthesis.

Authors:  Gustavo Caetano-Anollés; Kyung Mo Kim; Derek Caetano-Anollés
Journal:  J Mol Evol       Date:  2012-01-01       Impact factor: 2.395

7.  Noncanonical Roles of tRNAs: tRNA Fragments and Beyond.

Authors:  Zhangli Su; Briana Wilson; Pankaj Kumar; Anindya Dutta
Journal:  Annu Rev Genet       Date:  2020-08-25       Impact factor: 16.830

8.  TRNA mutations that affect decoding fidelity deregulate development and the proteostasis network in zebrafish.

Authors:  Marisa Reverendo; Ana R Soares; Patrícia M Pereira; Laura Carreto; Violeta Ferreira; Evelina Gatti; Philippe Pierre; Gabriela R Moura; Manuel A Santos
Journal:  RNA Biol       Date:  2014       Impact factor: 4.652

9.  Predicted class-I aminoacyl tRNA synthetase-like proteins in non-ribosomal peptide synthesis.

Authors:  L Aravind; Robson F de Souza; Lakshminarayan M Iyer
Journal:  Biol Direct       Date:  2010-08-02       Impact factor: 4.540

10.  Revisiting the biosynthesis of dehydrophos reveals a tRNA-dependent pathway.

Authors:  Despina J Bougioukou; Subha Mukherjee; Wilfred A van der Donk
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-17       Impact factor: 11.205

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