Literature DB >> 11497425

Translation: in retrospect and prospect.

C R Woese1.   

Abstract

This review is occasioned by the fact that the problem of translation, which has simmered on the biological sidelines for the last 40 years, is about to erupt center stage--thanks to the recent spectacular advances in ribosome structure. This most complex, beautiful, and fascinating of cellular mechanisms, the translation apparatus, is also the most important. Translation not only defines gene expression, but it is the sine qua non without which modern (protein-based) cells would not have come into existence. Yet from the start, the problem of translation has been misunderstood--a reflection of the molecular perspective that dominated Biology of the last century. In that the our conception of translation will play a significant role in creating the structure that is 21st century Biology, it is critical that our current (and fundamentally flawed) view of translation be understood for what it is and be reformulated to become an all-embracing perspective about which 21st century Biology can develop. Therefore, the present review is both a retrospective and a plea to biologists to establish a new evolutionary, RNA-World-centered concept of translation. What is needed is an evolutionarily oriented perspective that, first and foremost, focuses on the nature (and origin) of a primitive translation apparatus, the apparatus that transformed an ancient evolutionary era of nucleic acid life, the RNA World, into the world of modern cells.

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Year:  2001        PMID: 11497425      PMCID: PMC1370154          DOI: 10.1017/s1355838201010615

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  28 in total

1.  The complete atomic structure of the large ribosomal subunit at 2.4 A resolution.

Authors:  N Ban; P Nissen; J Hansen; P B Moore; T A Steitz
Journal:  Science       Date:  2000-08-11       Impact factor: 47.728

2.  Structure of functionally activated small ribosomal subunit at 3.3 angstroms resolution.

Authors:  F Schluenzen; A Tocilj; R Zarivach; J Harms; M Gluehmann; D Janell; A Bashan; H Bartels; I Agmon; F Franceschi; A Yonath
Journal:  Cell       Date:  2000-09-01       Impact factor: 41.582

3.  Structure of the 30S ribosomal subunit.

Authors:  B T Wimberly; D E Brodersen; W M Clemons; R J Morgan-Warren; A P Carter; C Vonrhein; T Hartsch; V Ramakrishnan
Journal:  Nature       Date:  2000-09-21       Impact factor: 49.962

4.  The structural basis of ribosome activity in peptide bond synthesis.

Authors:  P Nissen; J Hansen; N Ban; P B Moore; T A Steitz
Journal:  Science       Date:  2000-08-11       Impact factor: 47.728

Review 5.  THE SYNTHESIS OF PROTEINS UPON RIBOSOMES.

Authors:  J D WATSON
Journal:  Bull Soc Chim Biol (Paris)       Date:  1964

6.  On protein synthesis.

Authors:  F H CRICK
Journal:  Symp Soc Exp Biol       Date:  1958

7.  An historical account of protein synthesis, with current overtones--a personalized view.

Authors:  P C Zamecnik
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1969

8.  Molecular mechanics of translation: a reciprocating ratchet mechanism.

Authors:  C Woese
Journal:  Nature       Date:  1970-05-30       Impact factor: 49.962

9.  Reconstitution of 50S ribosomal subunits from dissociated molecular components.

Authors:  M Nomura; V A Erdmann
Journal:  Nature       Date:  1970-11-21       Impact factor: 49.962

10.  Hydroxyl radical cleavage of tRNA in the ribosomal P site.

Authors:  A Hüttenhofer; H F Noller
Journal:  Proc Natl Acad Sci U S A       Date:  1992-09-01       Impact factor: 11.205

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  40 in total

1.  Tracing the evolution of RNA structure in ribosomes.

Authors:  Gustavo Caetano-Anollés
Journal:  Nucleic Acids Res       Date:  2002-06-01       Impact factor: 16.971

2.  On the evolution of cells.

Authors:  Carl R Woese
Journal:  Proc Natl Acad Sci U S A       Date:  2002-06-19       Impact factor: 11.205

3.  Cryo-EM reveals an active role for aminoacyl-tRNA in the accommodation process.

Authors:  Mikel Valle; Jayati Sengupta; Neil K Swami; Robert A Grassucci; Nils Burkhardt; Knud H Nierhaus; Rajendra K Agrawal; Joachim Frank
Journal:  EMBO J       Date:  2002-07-01       Impact factor: 11.598

Review 4.  Gene duplication and other evolutionary strategies: from the RNA world to the future.

Authors:  Jürgen Brosius
Journal:  J Struct Funct Genomics       Date:  2003

Review 5.  A new biology for a new century.

Authors:  Carl R Woese
Journal:  Microbiol Mol Biol Rev       Date:  2004-06       Impact factor: 11.056

6.  Involvement of mitochondrial ribosomal proteins in ribosomal RNA-mediated protein folding.

Authors:  Anindita Das; Jaydip Ghosh; Arpita Bhattacharya; Dibyendu Samanta; Debasis Das; Chanchal Das Gupta
Journal:  J Biol Chem       Date:  2011-10-21       Impact factor: 5.157

7.  Domain III of the T. thermophilus 23S rRNA folds independently to a near-native state.

Authors:  Shreyas S Athavale; J Jared Gossett; Chiaolong Hsiao; Jessica C Bowman; Eric O'Neill; Eli Hershkovitz; Thanawadee Preeprem; Nicholas V Hud; Roger M Wartell; Stephen C Harvey; Loren Dean Williams
Journal:  RNA       Date:  2012-02-14       Impact factor: 4.942

8.  Selective forces for the origin of spliceosomes.

Authors:  Matej Vesteg; Zuzana Sándorová; Juraj Krajčovič
Journal:  J Mol Evol       Date:  2012-03-11       Impact factor: 2.395

9.  Imprints of the genetic code in the ribosome.

Authors:  David B F Johnson; Lei Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-12       Impact factor: 11.205

10.  An active role for tRNA in decoding beyond codon:anticodon pairing.

Authors:  Luisa Cochella; Rachel Green
Journal:  Science       Date:  2005-05-20       Impact factor: 47.728

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