Literature DB >> 16680201

Metabolomics: building on a century of biochemistry to guide human health.

J Bruce German, Bruce D Hammock, Steven M Watkins.   

Abstract

Medical diagnosis and treatment efficacy will improve significantly when a more personalized system for health assessment is implemented. This system will require diagnostics that provide sufficiently detailed information about the metabolic status of individuals such that assay results will be able to guide food, drug and lifestyle choices to maintain or improve distinct aspects of health without compromising others. Achieving this goal will use the new science of metabolomics - comprehensive metabolic profiling of individuals linked to the biological understanding of human integrative metabolism. Candidate technologies to accomplish this goal are largely available, yet they have not been brought into practice for this purpose. Metabolomic technologies must be sufficiently rapid, accurate and affordable to be routinely accessible to both healthy and acutely ill individuals. The use of metabolomic data to predict the health trajectories of individuals will require bioinformatic tools and quantitative reference databases. These databases containing metabolite profiles from the population must be built, stored and indexed according to metabolic and health status. Building and annotating these databases with the knowledge to predict how a specific metabolic pattern from an individual can be adjusted with diet, drugs and lifestyle to improve health represents a logical application of the biochemistry knowledge that the life sciences have produced over the past 100 years.

Entities:  

Year:  2005        PMID: 16680201      PMCID: PMC1457093          DOI: 10.1007/s11306-005-1102-8

Source DB:  PubMed          Journal:  Metabolomics        ISSN: 1573-3882            Impact factor:   4.290


  25 in total

Review 1.  'Metabonomics': understanding the metabolic responses of living systems to pathophysiological stimuli via multivariate statistical analysis of biological NMR spectroscopic data.

Authors:  J K Nicholson; J C Lindon; E Holmes
Journal:  Xenobiotica       Date:  1999-11       Impact factor: 1.908

2.  Rapid and noninvasive diagnosis of the presence and severity of coronary heart disease using 1H-NMR-based metabonomics.

Authors:  Joanne T Brindle; Henrik Antti; Elaine Holmes; George Tranter; Jeremy K Nicholson; Hugh W L Bethell; Sarah Clarke; Peter M Schofield; Elaine McKilligin; David E Mosedale; David J Grainger
Journal:  Nat Med       Date:  2002-11-25       Impact factor: 53.440

Review 3.  COX inhibitors and thromboregulation.

Authors:  Aaron J Marcus; M Johan Broekman; David J Pinsky
Journal:  N Engl J Med       Date:  2002-09-26       Impact factor: 91.245

4.  A vision for the future of genomics research.

Authors:  Francis S Collins; Eric D Green; Alan E Guttmacher; Mark S Guyer
Journal:  Nature       Date:  2003-04-14       Impact factor: 49.962

5.  Approach to lipoprotein management in 2001 National Cholesterol Guidelines.

Authors:  Scott M Grundy
Journal:  Am J Cardiol       Date:  2002-10-17       Impact factor: 2.778

6.  Simultaneous determination of plasma mevalonate and 7alpha-hydroxy-4-cholesten-3-one levels in hyperlipoproteinemia: convenient indices for estimating hepatic defects of cholesterol and bile acid syntheses and biliary cholesterol supersaturation.

Authors:  J Shoda; J Miyamoto; M Kano; T Ikegami; Y Matsuzaki; N Tanaka; T Osuga; H Miyazaki
Journal:  Hepatology       Date:  1997-01       Impact factor: 17.425

7.  Effects of phytosterol ester-enriched margarine on plasma lipoproteins in mild to moderate hypercholesterolemia are related to basal cholesterol and fat intake.

Authors:  Marcus J Mussner; Klaus G Parhofer; Klaus Von Bergmann; Peter Schwandt; Uli Broedl; Carsten Otto
Journal:  Metabolism       Date:  2002-02       Impact factor: 8.694

8.  Sterol absorption and sterol balance in phytosterolemia evaluated by deuterium-labeled sterols: effect of sitostanol treatment.

Authors:  D Lütjohann; I Björkhem; U F Beil; K von Bergmann
Journal:  J Lipid Res       Date:  1995-08       Impact factor: 5.922

9.  Simultaneous determination of mevalonate and 7 alpha-hydroxycholesterol in human plasma by gas chromatography-mass spectrometry as indices of cholesterol and bile acid biosynthesis.

Authors:  T Yoshida; A Honda; N Tanaka; Y Matsuzaki; B He; T Osuga; N Kobayashi; K Ozawa; H Miyazaki
Journal:  J Chromatogr       Date:  1993-04-02

10.  Quantitative metabolome analysis using capillary electrophoresis mass spectrometry.

Authors:  Tomoyoshi Soga; Yoshiaki Ohashi; Yuki Ueno; Hisako Naraoka; Masaru Tomita; Takaaki Nishioka
Journal:  J Proteome Res       Date:  2003 Sep-Oct       Impact factor: 4.466

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  80 in total

Review 1.  Urine metabolomics for kidney cancer detection and biomarker discovery.

Authors:  Sheila Ganti; Robert H Weiss
Journal:  Urol Oncol       Date:  2011 Sep-Oct       Impact factor: 3.498

2.  Exceptional production of both prodigiosin and cycloprodigiosin as major metabolic constituents by a novel marine bacterium, Zooshikella rubidus S1-1.

Authors:  Jong Suk Lee; Yong-Sook Kim; Sooyeon Park; Jihoon Kim; So-Jung Kang; Mi-Hwa Lee; Sangryeol Ryu; Jong Myoung Choi; Tae-Kwang Oh; Jung-Hoon Yoon
Journal:  Appl Environ Microbiol       Date:  2011-06-03       Impact factor: 4.792

3.  Standard operating procedures for pre-analytical handling of blood and urine for metabolomic studies and biobanks.

Authors:  Patrizia Bernini; Ivano Bertini; Claudio Luchinat; Paola Nincheri; Samuele Staderini; Paola Turano
Journal:  J Biomol NMR       Date:  2011-03-05       Impact factor: 2.835

4.  Integrative metabolome and transcriptome profiling reveals discordant energetic stress between mouse strains with differential sensitivity to acrolein-induced acute lung injury.

Authors:  James P Fabisiak; Mario Medvedovic; Danny C Alexander; Jonathan E McDunn; Vincent J Concel; Kiflai Bein; An Soo Jang; Annerose Berndt; Louis J Vuga; Kelly A Brant; Hannah Pope-Varsalona; Richard A Dopico; Koustav Ganguly; Swapna Upadhyay; Qian Li; Zhen Hu; Naftali Kaminski; George D Leikauf
Journal:  Mol Nutr Food Res       Date:  2011-08-08       Impact factor: 5.914

Review 5.  Metabolomic Studies in Drosophila.

Authors:  James E Cox; Carl S Thummel; Jason M Tennessen
Journal:  Genetics       Date:  2017-07       Impact factor: 4.562

Review 6.  An overview of renal metabolomics.

Authors:  Sahir Kalim; Eugene P Rhee
Journal:  Kidney Int       Date:  2016-09-28       Impact factor: 10.612

7.  Biomarker discovery in animal health and disease: the application of post-genomic technologies.

Authors:  Rowan E Moore; Jennifer Kirwan; Mary K Doherty; Phillip D Whitfield
Journal:  Biomark Insights       Date:  2007-07-10

8.  Metabolic profiling of Parkinson's disease: evidence of biomarker from gene expression analysis and rapid neural network detection.

Authors:  Shiek Ssj Ahmed; Winkins Santosh; Suresh Kumar; Hema T Thanka Christlet
Journal:  J Biomed Sci       Date:  2009-07-13       Impact factor: 8.410

9.  HMDB: a knowledgebase for the human metabolome.

Authors:  David S Wishart; Craig Knox; An Chi Guo; Roman Eisner; Nelson Young; Bijaya Gautam; David D Hau; Nick Psychogios; Edison Dong; Souhaila Bouatra; Rupasri Mandal; Igor Sinelnikov; Jianguo Xia; Leslie Jia; Joseph A Cruz; Emilia Lim; Constance A Sobsey; Savita Shrivastava; Paul Huang; Philip Liu; Lydia Fang; Jun Peng; Ryan Fradette; Dean Cheng; Dan Tzur; Melisa Clements; Avalyn Lewis; Andrea De Souza; Azaret Zuniga; Margot Dawe; Yeping Xiong; Derrick Clive; Russ Greiner; Alsu Nazyrova; Rustem Shaykhutdinov; Liang Li; Hans J Vogel; Ian Forsythe
Journal:  Nucleic Acids Res       Date:  2008-10-25       Impact factor: 16.971

10.  Metabolomics applied to diabetes research: moving from information to knowledge.

Authors:  James R Bain; Robert D Stevens; Brett R Wenner; Olga Ilkayeva; Deborah M Muoio; Christopher B Newgard
Journal:  Diabetes       Date:  2009-11       Impact factor: 9.461

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