Literature DB >> 28684601

Metabolomic Studies in Drosophila.

James E Cox1,2, Carl S Thummel3, Jason M Tennessen4.   

Abstract

Metabolomic analysis provides a powerful new tool for studies of Drosophila physiology. This approach allows investigators to detect thousands of chemical compounds in a single sample, representing the combined contributions of gene expression, enzyme activity, and environmental context. Metabolomics has been used for a wide range of studies in Drosophila, often providing new insights into gene function and metabolic state that could not be obtained using any other approach. In this review, we survey the uses of metabolomic analysis since its entry into the field. We also cover the major methods used for metabolomic studies in Drosophila and highlight new directions for future research.
Copyright © 2017 by the Genetics Society of America.

Entities:  

Keywords:  Flybook; homeostasis; metabolism; physiology; systems biology

Mesh:

Substances:

Year:  2017        PMID: 28684601      PMCID: PMC5500124          DOI: 10.1534/genetics.117.200014

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  105 in total

1.  Mild heat treatments induce long-term changes in metabolites associated with energy metabolism in Drosophila melanogaster.

Authors:  Pernille Sarup; Simon Metz Mariendal Petersen; Niels Chr Nielsen; Volker Loeschcke; Anders Malmendal
Journal:  Biogerontology       Date:  2016-08-10       Impact factor: 4.277

2.  A novel ion pairing LC/MS metabolomics protocol for study of a variety of biologically relevant polar metabolites.

Authors:  Jose M Knee; Teresa Z Rzezniczak; Aiko Barsch; Kevin Z Guo; Thomas J S Merritt
Journal:  J Chromatogr B Analyt Technol Biomed Life Sci       Date:  2013-08-07       Impact factor: 3.205

3.  Metabolomic Analysis Provides Insights on Paraquat-Induced Parkinson-Like Symptoms in Drosophila melanogaster.

Authors:  Arvind Kumar Shukla; Ch Ratnasekhar; Prakash Pragya; Hitesh Singh Chaouhan; Devendra Kumar Patel; Debapratim Kar Chowdhuri; Mohana Krishna Reddy Mudiam
Journal:  Mol Neurobiol       Date:  2014-11-27       Impact factor: 5.590

4.  Uncovering the benefits of fluctuating thermal regimes on cold tolerance of drosophila flies by combined metabolomic and lipidomic approach.

Authors:  Hervé Colinet; David Renault; Marion Javal; Petra Berková; Petr Šimek; Vladimír Koštál
Journal:  Biochim Biophys Acta       Date:  2016-08-16

5.  Quantitative metabolome analysis using capillary electrophoresis mass spectrometry.

Authors:  Tomoyoshi Soga; Yoshiaki Ohashi; Yuki Ueno; Hisako Naraoka; Masaru Tomita; Takaaki Nishioka
Journal:  J Proteome Res       Date:  2003 Sep-Oct       Impact factor: 4.466

6.  The developmental transcriptome of Drosophila melanogaster.

Authors:  Brenton R Graveley; Angela N Brooks; Joseph W Carlson; Michael O Duff; Jane M Landolin; Li Yang; Carlo G Artieri; Marijke J van Baren; Nathan Boley; Benjamin W Booth; James B Brown; Lucy Cherbas; Carrie A Davis; Alex Dobin; Renhua Li; Wei Lin; John H Malone; Nicolas R Mattiuzzo; David Miller; David Sturgill; Brian B Tuch; Chris Zaleski; Dayu Zhang; Marco Blanchette; Sandrine Dudoit; Brian Eads; Richard E Green; Ann Hammonds; Lichun Jiang; Phil Kapranov; Laura Langton; Norbert Perrimon; Jeremy E Sandler; Kenneth H Wan; Aarron Willingham; Yu Zhang; Yi Zou; Justen Andrews; Peter J Bickel; Steven E Brenner; Michael R Brent; Peter Cherbas; Thomas R Gingeras; Roger A Hoskins; Thomas C Kaufman; Brian Oliver; Susan E Celniker
Journal:  Nature       Date:  2010-12-22       Impact factor: 49.962

7.  MetaboAnalyst 3.0--making metabolomics more meaningful.

Authors:  Jianguo Xia; Igor V Sinelnikov; Beomsoo Han; David S Wishart
Journal:  Nucleic Acids Res       Date:  2015-04-20       Impact factor: 16.971

8.  Effects of age, sex, and genotype on high-sensitivity metabolomic profiles in the fruit fly, Drosophila melanogaster.

Authors:  Jessica M Hoffman; Quinlyn A Soltow; Shuzhao Li; Alfire Sidik; Dean P Jones; Daniel E L Promislow
Journal:  Aging Cell       Date:  2014-03-18       Impact factor: 9.304

9.  Contribution of Drosophila TRPA1 to Metabolism.

Authors:  Jung-Eun Lee; Yunjung Kim; Kyoung Heon Kim; Do Yup Lee; Youngseok Lee
Journal:  PLoS One       Date:  2016-04-07       Impact factor: 3.240

10.  Metabolomics with Nuclear Magnetic Resonance Spectroscopy in a Drosophila melanogaster Model of Surviving Sepsis.

Authors:  Veli Bakalov; Roland Amathieu; Mohamed N Triba; Marie-Jeanne Clément; Laura Reyes Uribe; Laurence Le Moyec; Ata Murat Kaynar
Journal:  Metabolites       Date:  2016-12-21
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  17 in total

Review 1.  Genotype to phenotype: Diet-by-mitochondrial DNA haplotype interactions drive metabolic flexibility and organismal fitness.

Authors:  Wen C Aw; Samuel G Towarnicki; Richard G Melvin; Neil A Youngson; Michael R Garvin; Yifang Hu; Shaun Nielsen; Torsten Thomas; Russell Pickford; Sonia Bustamante; Antón Vila-Sanjurjo; Gordon K Smyth; J William O Ballard
Journal:  PLoS Genet       Date:  2018-11-06       Impact factor: 5.917

2.  Preparation of Drosophila Larval Samples for Gas Chromatography-Mass Spectrometry (GC-MS)-based Metabolomics.

Authors:  Hongde Li; Jason M Tennessen
Journal:  J Vis Exp       Date:  2018-06-06       Impact factor: 1.355

3.  Lactate dehydrogenase and glycerol-3-phosphate dehydrogenase cooperatively regulate growth and carbohydrate metabolism during Drosophila melanogaster larval development.

Authors:  Hongde Li; Madhulika Rai; Kasun Buddika; Maria C Sterrett; Arthur Luhur; Nader H Mahmoudzadeh; Cole R Julick; Rose C Pletcher; Geetanjali Chawla; Chelsea J Gosney; Anna K Burton; Jonathan A Karty; Kristi L Montooth; Nicholas S Sokol; Jason M Tennessen
Journal:  Development       Date:  2019-09-12       Impact factor: 6.868

4.  Glucose metabolomic profile during embryogenesis in the tick Rhipicephalus microplus.

Authors:  Jhenifer Nascimento da Silva; Daniel Luiz Reis Simas; Angelica Ribeiro Soares; Heitor Monteiro Duarte; Jorge Moraes; Christiano Calixto Conceição; Renato Martins da Silva; Itabajara da Silva Vaz; Carlos Logullo
Journal:  Metabolomics       Date:  2021-08-31       Impact factor: 4.290

5.  Global stable-isotope tracing metabolomics reveals system-wide metabolic alternations in aging Drosophila.

Authors:  Ruohong Wang; Yandong Yin; Jingshu Li; Hongmiao Wang; Wanting Lv; Yang Gao; Tangci Wang; Yedan Zhong; Zhiwei Zhou; Yuping Cai; Xiaoyang Su; Nan Liu; Zheng-Jiang Zhu
Journal:  Nat Commun       Date:  2022-06-20       Impact factor: 17.694

6.  CDK8 mediates the dietary effects on developmental transition in Drosophila.

Authors:  Xinsheng Gao; Xiao-Jun Xie; Fu-Ning Hsu; Xiao Li; Mengmeng Liu; Rajitha-Udakara-Sampath Hemba-Waduge; Wu Xu; Jun-Yuan Ji
Journal:  Dev Biol       Date:  2018-10-21       Impact factor: 3.582

7.  Metabolomic Analysis Reveals That the Drosophila melanogaster Gene lysine Influences Diverse Aspects of Metabolism.

Authors:  Samantha L St Clair; Hongde Li; Usman Ashraf; Jonathan A Karty; Jason M Tennessen
Journal:  Genetics       Date:  2017-10-06       Impact factor: 4.562

8.  The impact of genome variation and diet on the metabolic phenotype and microbiome composition of Drosophila melanogaster.

Authors:  Lisa Jehrke; Fiona A Stewart; Andrea Droste; Mathias Beller
Journal:  Sci Rep       Date:  2018-04-18       Impact factor: 4.379

9.  An expanded toolkit for gene tagging based on MiMIC and scarless CRISPR tagging in Drosophila.

Authors:  David Li-Kroeger; Oguz Kanca; Pei-Tseng Lee; Sierra Cowan; Michael T Lee; Manish Jaiswal; Jose Luis Salazar; Yuchun He; Zhongyuan Zuo; Hugo J Bellen
Journal:  Elife       Date:  2018-08-09       Impact factor: 8.140

10.  An Improved Method for Measuring Absolute Metabolite Concentrations in Small Biofluid or Tissue Samples.

Authors:  Tharindu Fernando; Annick Sawala; Andrew P Bailey; Alex P Gould; Paul C Driscoll
Journal:  J Proteome Res       Date:  2019-02-22       Impact factor: 4.466

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