Literature DB >> 16674148

Osmotic coefficients of atomistic NaCl (aq) force fields.

Berk Hess1, Christian Holm, Nico van der Vegt.   

Abstract

Solvated ions are becoming increasingly important for (bio)molecular simulations. But there are not much suitable data to validate the intermediate-range solution structure that ion-water force fields produce. We compare six selected combinations of four biomolecular Na-Cl force fields and four popular water models by means of effective ion-ion potentials. First we derive an effective potential at high dilution from simulations of two ions in explicit water. At higher ionic concentration multibody effects will become important. We propose to capture those by employing a concentration dependent dielectric permittivity. With the so obtained effective potentials we then perform implicit solvent simulations. We demonstrate that our effective potentials accurately reproduce ion-ion coordination numbers and the local structure. They allow us furthermore to calculate osmotic coefficients that can be directly compared with experimental data. We show that the osmotic coefficient is a sensitive and accurate measure for the effective ion-ion interactions and the intermediate-range structure of the solution. It is therefore a suitable and useful quantity for validating and parametrizing atomistic ion-water force fields.

Entities:  

Year:  2006        PMID: 16674148     DOI: 10.1063/1.2185105

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  19 in total

1.  Crowding effects on the formation and maintenance of nuclear bodies: insights from molecular-dynamics simulations of simple spherical model particles.

Authors:  Eun Jin Cho; Jun Soo Kim
Journal:  Biophys J       Date:  2012-08-08       Impact factor: 4.033

2.  Ion disturbance and clustering in the NaCl water solutions.

Authors:  Qiang Zhang; Xia Zhang; Dong-Xia Zhao
Journal:  J Mol Model       Date:  2012-09-23       Impact factor: 1.810

3.  Derivation of coarse-grained potentials via multistate iterative Boltzmann inversion.

Authors:  Timothy C Moore; Christopher R Iacovella; Clare McCabe
Journal:  J Chem Phys       Date:  2014-06-14       Impact factor: 3.488

4.  Strong attractions and repulsions mediated by monovalent salts.

Authors:  Yaohua Li; Martin Girard; Meng Shen; Jaime Andres Millan; Monica Olvera de la Cruz
Journal:  Proc Natl Acad Sci U S A       Date:  2017-10-23       Impact factor: 11.205

5.  Simulation study of ion pairing in concentrated aqueous salt solutions with a polarizable force field.

Authors:  Yun Luo; Wei Jiang; Haibo Yu; Alexander D MacKerell; Benoit Roux
Journal:  Faraday Discuss       Date:  2013       Impact factor: 4.008

6.  Water under the BAR.

Authors:  Edward Lyman; Haosheng Cui; Gregory A Voth
Journal:  Biophys J       Date:  2010-09-22       Impact factor: 4.033

7.  An Investigation of Ion-Pairing of Alkali Metal Halides in Aqueous Solutions Using the Electrical Conductivity and the Monte Carlo Computer Simulation Methods.

Authors:  Jure Gujt; Marija Bešter-Rogač; Barbara Hribar-Lee
Journal:  J Mol Liq       Date:  2014-02       Impact factor: 6.165

Review 8.  New tricks for old dogs: improving the accuracy of biomolecular force fields by pair-specific corrections to non-bonded interactions.

Authors:  Jejoong Yoo; Aleksei Aksimentiev
Journal:  Phys Chem Chem Phys       Date:  2018-03-28       Impact factor: 3.676

9.  Polarizable water model for the coarse-grained MARTINI force field.

Authors:  Semen O Yesylevskyy; Lars V Schäfer; Durba Sengupta; Siewert J Marrink
Journal:  PLoS Comput Biol       Date:  2010-06-10       Impact factor: 4.475

10.  Ion pairing in molecular simulations of aqueous alkali halide solutions.

Authors:  Christopher J Fennell; Alan Bizjak; Vojko Vlachy; Ken A Dill
Journal:  J Phys Chem B       Date:  2009-05-14       Impact factor: 2.991

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