Literature DB >> 20858422

Water under the BAR.

Edward Lyman1, Haosheng Cui, Gregory A Voth.   

Abstract

Many cellular processes require the generation of highly curved regions of cell membranes by interfacial membrane proteins. A number of such proteins are now known, and several mechanisms of curvature generation have been suggested, but so far a quantitative understanding of the importance of the various potential mechanisms remains elusive. Following previous theoretical work, we consider the electrostatic attraction that underlies the scaffold mechanism of membrane bending in the context of the N-BAR domain of amphiphysin. Analysis of atomistic molecular dynamics simulations reveals considerable water between the membrane and the positively charged concave face of the BAR, even when it is tightly bound to highly curved membranes. This results in significant screening of electrostatic interactions, suggesting that electrostatic attraction is not the main driving force behind curvature sensing, supporting recent experimental work. These results also emphasize the need for care when building coarse-grained models of protein-membrane interactions. These results are emphasized by simulations of oligomerized amphiphysin N-BARs at the atomistic and coarse-grained level. In the coarse-grained simulations, we find a strong dependence of the induced curvature on the dielectric screening.
Copyright © 2010 Biophysical Society. Published by Elsevier Inc. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2010        PMID: 20858422      PMCID: PMC2941004          DOI: 10.1016/j.bpj.2010.06.074

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  32 in total

Review 1.  Membrane curvature: how BAR domains bend bilayers.

Authors:  Joshua Zimmerberg; Stuart McLaughlin
Journal:  Curr Biol       Date:  2004-03-23       Impact factor: 10.834

Review 2.  How proteins produce cellular membrane curvature.

Authors:  Joshua Zimmerberg; Michael M Kozlov
Journal:  Nat Rev Mol Cell Biol       Date:  2006-01       Impact factor: 94.444

Review 3.  Membrane curvature and mechanisms of dynamic cell membrane remodelling.

Authors:  Harvey T McMahon; Jennifer L Gallop
Journal:  Nature       Date:  2005-12-01       Impact factor: 49.962

4.  Membrane remodeling from N-BAR domain interactions: insights from multi-scale simulation.

Authors:  Gary S Ayton; Philip D Blood; Gregory A Voth
Journal:  Biophys J       Date:  2007-02-26       Impact factor: 4.033

5.  A general amphipathic alpha-helical motif for sensing membrane curvature.

Authors:  Guillaume Drin; Jean-François Casella; Romain Gautier; Thomas Boehmer; Thomas U Schwartz; Bruno Antonny
Journal:  Nat Struct Mol Biol       Date:  2007-01-14       Impact factor: 15.369

6.  The MARTINI force field: coarse grained model for biomolecular simulations.

Authors:  Siewert J Marrink; H Jelger Risselada; Serge Yefimov; D Peter Tieleman; Alex H de Vries
Journal:  J Phys Chem B       Date:  2007-06-15       Impact factor: 2.991

7.  Molecular dynamics simulation for polymers in the presence of a heat bath.

Authors: 
Journal:  Phys Rev A Gen Phys       Date:  1986-05

8.  The hydrophobic insertion mechanism of membrane curvature generation by proteins.

Authors:  Felix Campelo; Harvey T McMahon; Michael M Kozlov
Journal:  Biophys J       Date:  2008-05-30       Impact factor: 4.033

9.  How synaptotagmin promotes membrane fusion.

Authors:  Sascha Martens; Michael M Kozlov; Harvey T McMahon
Journal:  Science       Date:  2007-05-03       Impact factor: 47.728

10.  Generation of high curvature membranes mediated by direct endophilin bilayer interactions.

Authors:  K Farsad; N Ringstad; K Takei; S R Floyd; K Rose; P De Camilli
Journal:  J Cell Biol       Date:  2001-10-15       Impact factor: 10.539

View more
  17 in total

1.  Structural basis of membrane bending by the N-BAR protein endophilin.

Authors:  Carsten Mim; Haosheng Cui; Joseph A Gawronski-Salerno; Adam Frost; Edward Lyman; Gregory A Voth; Vinzenz M Unger
Journal:  Cell       Date:  2012-03-30       Impact factor: 41.582

2.  Application of a free-energy-landscape approach to study tension-dependent bilayer tubulation mediated by curvature-inducing proteins.

Authors:  Richard W Tourdot; N Ramakrishnan; Tobias Baumgart; Ravi Radhakrishnan
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2015-10-29

3.  Multiscale Simulations of Biological Membranes: The Challenge To Understand Biological Phenomena in a Living Substance.

Authors:  Giray Enkavi; Matti Javanainen; Waldemar Kulig; Tomasz Róg; Ilpo Vattulainen
Journal:  Chem Rev       Date:  2019-03-12       Impact factor: 60.622

4.  Understanding the role of amphipathic helices in N-BAR domain driven membrane remodeling.

Authors:  Haosheng Cui; Carsten Mim; Francisco X Vázquez; Edward Lyman; Vinzenz M Unger; Gregory A Voth
Journal:  Biophys J       Date:  2013-01-22       Impact factor: 4.033

5.  Characterization of Lipid-Protein Interactions and Lipid-Mediated Modulation of Membrane Protein Function through Molecular Simulation.

Authors:  Melanie P Muller; Tao Jiang; Chang Sun; Muyun Lihan; Shashank Pant; Paween Mahinthichaichan; Anda Trifan; Emad Tajkhorshid
Journal:  Chem Rev       Date:  2019-04-12       Impact factor: 60.622

Review 6.  Multiscale simulations of protein-facilitated membrane remodeling.

Authors:  Aram Davtyan; Mijo Simunovic; Gregory A Voth
Journal:  J Struct Biol       Date:  2016-06-17       Impact factor: 2.867

Review 7.  Membrane curvature and its generation by BAR proteins.

Authors:  Carsten Mim; Vinzenz M Unger
Journal:  Trends Biochem Sci       Date:  2012-10-08       Impact factor: 13.807

8.  Biophysics of membrane curvature remodeling at molecular and mesoscopic lengthscales.

Authors:  N Ramakrishnan; Ryan P Bradley; Richard W Tourdot; Ravi Radhakrishnan
Journal:  J Phys Condens Matter       Date:  2018-05-22       Impact factor: 2.333

9.  The N-Terminal Amphipathic Helix of Endophilin Does Not Contribute to Its Molecular Curvature Generation Capacity.

Authors:  Zhiming Chen; Chen Zhu; Curtis J Kuo; Jaclyn Robustelli; Tobias Baumgart
Journal:  J Am Chem Soc       Date:  2016-10-28       Impact factor: 15.419

Review 10.  Exosomes and microvesicles: identification and targeting by particle size and lipid chemical probes.

Authors:  Noah Kastelowitz; Hang Yin
Journal:  Chembiochem       Date:  2014-04-16       Impact factor: 3.164

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.