Literature DB >> 16612538

A sequential "2-1-3" model of genetic code evolution that explains codon constraints.

Steven E Massey.   

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Year:  2006        PMID: 16612538     DOI: 10.1007/s00239-005-0222-0

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


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  10 in total

Review 1.  The code within the codons.

Authors:  F J Taylor; D Coates
Journal:  Biosystems       Date:  1989       Impact factor: 1.973

2.  A quantitative measure of error minimization in the genetic code.

Authors:  D Haig; L D Hurst
Journal:  J Mol Evol       Date:  1991-11       Impact factor: 2.395

3.  The anticodon loop is a major identity determinant of Saccharomyces cerevisiae tRNA(Leu).

Authors:  A Soma; R Kumagai; K Nishikawa; H Himeno
Journal:  J Mol Biol       Date:  1996-11-15       Impact factor: 5.469

4.  Compositional constraints and genome evolution.

Authors:  G Bernardi; G Bernardi
Journal:  J Mol Evol       Date:  1986       Impact factor: 2.395

5.  The genetic code and error transmission.

Authors:  C Alff-Steinberger
Journal:  Proc Natl Acad Sci U S A       Date:  1969-10       Impact factor: 11.205

6.  On the evolution of the genetic code.

Authors:  C R Woese
Journal:  Proc Natl Acad Sci U S A       Date:  1965-12       Impact factor: 11.205

7.  A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences.

Authors:  M Kimura
Journal:  J Mol Evol       Date:  1980-12       Impact factor: 2.395

8.  A conformational rationale for the wobble behaviour of the first base of the anticodon triplet in tRNA.

Authors:  R Balasubramaian; P Seetharamulu
Journal:  J Theor Biol       Date:  1983-03-07       Impact factor: 2.691

9.  The long extra arms of human tRNA((Ser)Sec) and tRNA(Ser) function as major identify elements for serylation in an orientation-dependent, but not sequence-specific manner.

Authors:  X Q Wu; H J Gross
Journal:  Nucleic Acids Res       Date:  1993-12-11       Impact factor: 16.971

10.  Recognition of human mitochondrial tRNALeu(UUR) by its cognate leucyl-tRNA synthetase.

Authors:  Bénédicte Sohm; Marie Sissler; Hyejeong Park; Michael P King; Catherine Florentz
Journal:  J Mol Biol       Date:  2004-05-21       Impact factor: 5.469

  10 in total
  11 in total

1.  A neutral origin for error minimization in the genetic code.

Authors:  Steven E Massey
Journal:  J Mol Evol       Date:  2008-10-15       Impact factor: 2.395

2.  Evolution of the genetic code by incorporation of amino acids that improved or changed protein function.

Authors:  Brian R Francis
Journal:  J Mol Evol       Date:  2013-06-07       Impact factor: 2.395

3.  A realistic model under which the genetic code is optimal.

Authors:  Harry Buhrman; Peter T S van der Gulik; Gunnar W Klau; Christian Schaffner; Dave Speijer; Leen Stougie
Journal:  J Mol Evol       Date:  2013-07-23       Impact factor: 2.395

4.  Genetic code evolution reveals the neutral emergence of mutational robustness, and information as an evolutionary constraint.

Authors:  Steven E Massey
Journal:  Life (Basel)       Date:  2015-04-24

5.  Frozen Accident Pushing 50: Stereochemistry, Expansion, and Chance in the Evolution of the Genetic Code.

Authors:  Eugene V Koonin
Journal:  Life (Basel)       Date:  2017-05-23

6.  Optimization of the standard genetic code according to three codon positions using an evolutionary algorithm.

Authors:  Paweł Błażej; Małgorzata Wnętrzak; Dorota Mackiewicz; Paweł Mackiewicz
Journal:  PLoS One       Date:  2018-08-09       Impact factor: 3.240

7.  The influence of different types of translational inaccuracies on the genetic code structure.

Authors:  Paweł BłaŻej; Małgorzata Wnetrzak; Dorota Mackiewicz; Paweł Mackiewicz
Journal:  BMC Bioinformatics       Date:  2019-03-06       Impact factor: 3.169

8.  Crick Wobble and Superwobble in Standard Genetic Code Evolution.

Authors:  Michael Yarus
Journal:  J Mol Evol       Date:  2021-01-07       Impact factor: 2.395

9.  Fitting the standard genetic code into its triplet table.

Authors:  Michael Yarus
Journal:  Proc Natl Acad Sci U S A       Date:  2021-09-07       Impact factor: 11.205

10.  Computational Analysis of Genetic Code Variations Optimized for the Robustness against Point Mutations with Wobble-like Effects.

Authors:  Elena Fimmel; Markus Gumbel; Martin Starman; Lutz Strüngmann
Journal:  Life (Basel)       Date:  2021-12-03
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