Literature DB >> 33409542

Crick Wobble and Superwobble in Standard Genetic Code Evolution.

Michael Yarus1.   

Abstract

Wobble coding is inevitable during evolution of the Standard Genetic Code (SGC). It ultimately splits half of NN U/C/A/G coding boxes with different assignments. Further, it contributes to pervasive SGC order by reinforcing close spacing for identical SGC assignments. But wobble cannot appear too soon, or it will inhibit encoding and more decisively, obstruct evolution of full coding tables. However, these prior results assumed Crick wobble, NN U/C and NN A/G, read by a single adaptor RNA. Superwobble translates NN U/C/A/G codons, using one adaptor RNA with an unmodified 5' anticodon U (appropriate to earliest coding) in modern mitochondria, plastids, and mycoplasma. Assuming the SGC was selected when evolving codes most resembled it, characteristics of the critical selection events can be calculated. For example, continuous superwobble infrequently evolves SGC-like coding tables. So, continuous superwobble is a very improbable origin hypothesis. In contrast, late-arising superwobble shares late Crick wobble's frequent resemblance to SGC order. Thus late superwobble is possible, but yields SGC-like assignments less frequently than late Crick wobble. Ancient coding ambiguity, most simply, arose from Crick wobble alone. This is consistent with SGC assignments to NAN codons.

Entities:  

Keywords:  Anticodon; Coding; Codon; Superwobble; Triplet

Year:  2021        PMID: 33409542      PMCID: PMC7884361          DOI: 10.1007/s00239-020-09985-7

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  40 in total

1.  Evidence of abundant stop codon readthrough in Drosophila and other metazoa.

Authors:  Irwin Jungreis; Michael F Lin; Rebecca Spokony; Clara S Chan; Nicolas Negre; Alec Victorsen; Kevin P White; Manolis Kellis
Journal:  Genome Res       Date:  2011-10-12       Impact factor: 9.043

Review 2.  The code within the codons.

Authors:  F J Taylor; D Coates
Journal:  Biosystems       Date:  1989       Impact factor: 1.973

3.  Superwobbling facilitates translation with reduced tRNA sets.

Authors:  Marcelo Rogalski; Daniel Karcher; Ralph Bock
Journal:  Nat Struct Mol Biol       Date:  2008-01-13       Impact factor: 15.369

Review 4.  The genetic code of the fungal CTG clade.

Authors:  Manuel A S Santos; Ana C Gomes; Maria C Santos; Laura C Carreto; Gabriela R Moura
Journal:  C R Biol       Date:  2011-07-02       Impact factor: 1.583

5.  Codon recognition patterns as deduced from sequences of the complete set of transfer RNA species in Mycoplasma capricolum. Resemblance to mitochondria.

Authors:  Y Andachi; F Yamao; A Muto; S Osawa
Journal:  J Mol Biol       Date:  1989-09-05       Impact factor: 5.469

6.  Total synthesis of Escherichia coli with a recoded genome.

Authors:  Julius Fredens; Kaihang Wang; Daniel de la Torre; Louise F H Funke; Wesley E Robertson; Yonka Christova; Tiongsun Chia; Wolfgang H Schmied; Daniel L Dunkelmann; Václav Beránek; Chayasith Uttamapinant; Andres Gonzalez Llamazares; Thomas S Elliott; Jason W Chin
Journal:  Nature       Date:  2019-05-15       Impact factor: 49.962

7.  Features of the formate dehydrogenase mRNA necessary for decoding of the UGA codon as selenocysteine.

Authors:  F Zinoni; J Heider; A Böck
Journal:  Proc Natl Acad Sci U S A       Date:  1990-06       Impact factor: 11.205

8.  An aminoacyl-tRNA synthetase that specifically activates pyrrolysine.

Authors:  Carla Polycarpo; Alexandre Ambrogelly; Amélie Bérubé; SusAnn M Winbush; James A McCloskey; Pamela F Crain; John L Wood; Dieter Söll
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-16       Impact factor: 11.205

9.  Novel features in the genetic code and codon reading patterns in Neurospora crassa mitochondria based on sequences of six mitochondrial tRNAs.

Authors:  J E Heckman; J Sarnoff; B Alzner-DeWeerd; S Yin; U L RajBhandary
Journal:  Proc Natl Acad Sci U S A       Date:  1980-06       Impact factor: 11.205

Review 10.  An integrated, structure- and energy-based view of the genetic code.

Authors:  Henri Grosjean; Eric Westhof
Journal:  Nucleic Acids Res       Date:  2016-07-22       Impact factor: 16.971

View more
  4 in total

1.  Fitting the standard genetic code into its triplet table.

Authors:  Michael Yarus
Journal:  Proc Natl Acad Sci U S A       Date:  2021-09-07       Impact factor: 11.205

Review 2.  "Superwobbling" and tRNA-34 Wobble and tRNA-37 Anticodon Loop Modifications in Evolution and Devolution of the Genetic Code.

Authors:  Lei Lei; Zachary Frome Burton
Journal:  Life (Basel)       Date:  2022-02-08

3.  A crescendo of competent coding (c3) contains the Standard Genetic Code.

Authors:  Michael Yarus
Journal:  RNA       Date:  2022-07-22       Impact factor: 5.636

4.  Mutational Asymmetries in the SARS-CoV-2 Genome May Lead to Increased Hydrophobicity of Virus Proteins.

Authors:  Roman Matyášek; Kateřina Řehůřková; Kristýna Berta Marošiová; Aleš Kovařík
Journal:  Genes (Basel)       Date:  2021-05-27       Impact factor: 4.096

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.